Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0683
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 29 0.48
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.63
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.83
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 4.4
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 5.9
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 5.9
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.8
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 25 7.8
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 29.5 bits (63), Expect = 0.48
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 60 KRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLKKLLEIKRYNVEMAES- 236
K KK ++SI K T ++ L + +L + ++ N R + KLL+I + + E AES
Sbjct: 1606 KSKKHHLKSIVVK-CTLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESF 1664
Query: 237 HYNFQLR 257
+ +F++R
Sbjct: 1665 NSDFEIR 1671
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/41 (26%), Positives = 28/41 (68%)
Frame = +3
Query: 12 EMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVM 134
E++K EK R + +++RK+++ + +R K+ +R+R +++
Sbjct: 126 ELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQIL 166
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 51 LREKRKKDKIESIRRKQYTERMR 119
L+EKRKK++ E++RRK+ ++ R
Sbjct: 338 LKEKRKKEQDENVRRKRENKKRR 360
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIES 86
RAE++++ RR EL+E K++KIE+
Sbjct: 103 RAELEEKLAKRREQELQELEKQEKIEA 129
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 24 EEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADL 143
EE LR + E+ +K I RRK +TE A ++A+L
Sbjct: 1405 EEVLRAKLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAEL 1444
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 18 DKEEKLRRITELREKRKKDKIESIRRK 98
+KEE+LR + E + K+KKD +++RK
Sbjct: 110 EKEEELRNLEEEKAKKKKD--ANLKRK 134
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 24 EEKLRRITELREKRKKDKIESIRRKQYTERMRA 122
+E + EL+E+ KDK + RR+ E++R+
Sbjct: 459 DESMNLYAELQEQWLKDKSKKARRRAEREKLRS 491
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +2
Query: 302 FERNYVAQNFYRKKVLRKYFEGFKKNHYEFVLKMQVAVD 418
+E + N+Y KY + FKKN++ ++ D
Sbjct: 340 YEFGFETGNYYTLSNFEKYCDNFKKNYFSKFKDSEITED 378
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 21 KEEKLRRITELREKRKKDKIESIR 92
K+E+ RR EL EK KK+K E IR
Sbjct: 131 KDEEERRKKELMEKEKKEK-ERIR 153
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 18 DKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHY 149
++++ RRI +L + K + ++ +RKQ + MR ++ DL Y
Sbjct: 70 ERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRKCQI--DLMY 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,986
Number of Sequences: 5004
Number of extensions: 51108
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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