Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0683
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 33 0.21
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 30 2.0
06_03_0684 - 23492110-23492567,23495610-23495742,23495844-23496140 29 2.6
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 29 2.6
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 29 2.6
06_03_0826 + 25117487-25117879 29 3.5
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 3.5
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 4.6
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 4.6
05_05_0299 - 23930657-23932627 28 6.0
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 ARAEMDKEEKLRRITELREKRKKDKI-ESIRRKQYTERMRALRVMAD 140
ARAE EE+ RR E R +RK++K+ E RR++ R + V+AD
Sbjct: 244 ARAE---EERRRREEERRRRRKEEKVREEARRREEQRRRLGITVVAD 287
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTER 113
R ++EEK RR E E+R+++K E RR++ +R
Sbjct: 505 RKRREEEEKERREREEEERRQREKEEKKRREEEEQR 540
>06_03_0684 - 23492110-23492567,23495610-23495742,23495844-23496140
Length = 295
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 51 LREKRKKDKI-ESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLKKLLEI-KRYN 218
+R+K +D++ + R+ E MR + + D H E L+ NY+ L++I K+Y+
Sbjct: 96 IRQKELQDRVARAAGRESKEELMRVRKEIVDFHGEMVLLENYSALNYTGLVKILKKYD 153
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 191 KAIRNKTIQRRDGGVTL*FPTKKNVFLNFMWYTEDMVFERNYVAQNFYRKKVLRKYFEG 367
KA+R K I+R D G PTKK + MWY ++ ++ +N +++R + EG
Sbjct: 228 KALRYK-IRRDDPGEVDGQPTKKRILAKVMWYFR-IIPRLRHLFRNKGNARMMRWHAEG 284
>02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 347 LRKYFEGFKKNHYEFVLKMQVAVDYYDYYVTNFMFRKFKEGINVLRKEFEIKVQELMHTM 526
L K+ E F+ +YE V ++ + +Y+TN RK KE + FE K+ E +
Sbjct: 848 LMKHAEEFRHYNYETVKQVSHPIHDQCFYLTNEHKRKLKEEHGIEPWTFEQKLGEAVFIP 907
Query: 527 KG 532
G
Sbjct: 908 AG 909
>06_03_0826 + 25117487-25117879
Length = 130
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 12 EMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRAL 125
+M+KE K ++ +EKRK+D+ ++ R K Y E + L
Sbjct: 82 QMEKENKDASFSQ-KEKRKRDRGQASRGKNYVEEEKRL 118
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMR 119
+ + +KEE+ R++ RE+ + + E +RR+++ ER R
Sbjct: 524 KKQREKEEEQRKLERDREEELEREREMMRRREHEERKR 561
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +3
Query: 18 DKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAI 179
D+E++ + RE++K++++ +++R T +A++ A L E +M Y +
Sbjct: 272 DEEQRRLELLRERERQKEEEVAALKRSMQTGMAQAMKEQARLREE--MMYQYRL 323
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 3 ARAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYER 155
+ +E D EE+ RR R +R+K++ E RR++ ++ R R + ER
Sbjct: 121 SESETDSEEERRR--RRRRRRRKEREEEERRRRRKDKERRKRKEKERERER 169
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 102 YTERMRALRVMADLHYERYLMVNYAIRPLKKLLEIKRYNVEMAESHYN 245
Y + L+ +ADL E + + L +E+K+ +VE ES YN
Sbjct: 158 YLRKNGDLKTVADLENEGTRKTDKLVANLASQVEVKKRHVEELESQYN 205
>05_05_0299 - 23930657-23932627
Length = 656
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 3 ARAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMAD 140
ARA+ ++ E+L+ + L++K +K+E IR + A ++ AD
Sbjct: 349 ARAKQEQAEELKHLKNLKKKEIAEKLERIRMIAGIDSDAACKLGAD 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,063
Number of Sequences: 37544
Number of extensions: 257184
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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