Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0683
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   33   0.16 
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)                31   1.2  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38433| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 30   2.0  
SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)                       30   2.0  
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)                    29   3.5  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)                     28   6.2  
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)                28   8.1  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   8.1  

>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +3

Query: 12  EMDKEEKLRRITELREKRKKDKIESIRR-KQYTERMRALRVMADLHYERYLMVNYAIRPL 188
           +M +EEK R+ TE RE++ +++ + IRR ++  ER+R  +   +        +  AI+PL
Sbjct: 497 QMAEEEKRRKETEERERQAREEEDRIRREREEAERLRREKEQREQLVPHSDALECAIKPL 556

Query: 189 KKLLEIK 209
             LLE +
Sbjct: 557 -NLLEAR 562



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   ARAEMDKEEKLRRITELREKRKKDKIESIRR-KQYTER 113
           AR + + EEKLRR+ +L+EK +K K+E+ ++ K+  ER
Sbjct: 270 AREKAEMEEKLRRL-KLQEKEEKRKLEAEKKEKERVER 306



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +3

Query: 3   ARAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIR 182
           A AE+ ++++L R   LREKRK++K +  R     E+ RA  +   L   R  +      
Sbjct: 580 AEAELKRKQELER---LREKRKEEKAQRERELIEQEKNRAREIYISLKRVREQVKQKEAE 636

Query: 183 PLKKLLE 203
             +KL E
Sbjct: 637 EQRKLEE 643


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERY 158
           R + +KEE+ RR+ +  EKRKK+ +E  RRK   E++        L ++RY
Sbjct: 583 REKREKEERERRMRD-EEKRKKELLEE-RRKGIIEKLECCMRKQPLGFDRY 631


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +3

Query: 12  EMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAI---R 182
           E ++E + RR+  +RE+R++ + E  R ++  ER R L  +  L   R       +   R
Sbjct: 621 ERERERERRRLEYMREQRRRQEEERARLQRELERRRELERLRVLRERREREERERLERER 680

Query: 183 PLKKLLEIKRYNVEMAE 233
             +++LE +R   E AE
Sbjct: 681 REREVLERERLERERAE 697



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYER 155
           R E  ++ K R + + REK ++D+I   R ++   R RAL    +   ER
Sbjct: 577 RTERQRQAKAREVRDAREKERQDRIR--RERERIARERALERERERERER 624


>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
          Length = 696

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/29 (41%), Positives = 24/29 (82%)
 Frame = +3

Query: 12  EMDKEEKLRRITELREKRKKDKIESIRRK 98
           + D EEK+RR+TE R+ ++K +++S++R+
Sbjct: 557 QKDFEEKIRRLTE-RDSQRKGQVDSLKRQ 584


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTER-MRALRVMAD 140
           + + +KEE+L+R+ E + + +K+K E IRR+   ER +R  R++A+
Sbjct: 365 KGQQEKEEELKRLLERQLEEEKEKKEYIRRE--AERLLREERLIAE 408


>SB_38433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQ 101
           R + D+EE+       REKR+K+K E  RRK+
Sbjct: 45  REQRDREEREEEKKSQREKRQKEKEEEKRRKE 76


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 21   KEEKLRRITELREKRK---KDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLK 191
            +EEK +R  E+REK K   ++KI+  +RKQ     R  +   D   E   +    +R L+
Sbjct: 1187 REEKKKREEEMREKEKEMEQNKIDQEKRKQELMESRRFQEEQDRLEEERRLEEERLRQLE 1246

Query: 192  KLLEIKRYNVE 224
            +  E +R   E
Sbjct: 1247 EEDEQRRLEEE 1257


>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
          Length = 395

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 290 EDMVFER--NYVAQNFYRKKVLRKYFEGFKKNHYEFVLKMQVAVDYYDYYVTNFMFRKFK 463
           ED++F +  NY+ +   RK +++ Y +  +  +YE V   ++   YY+     F  R+  
Sbjct: 281 EDVLFIKADNYILRRLVRKNIVKNYVKSSRIRYYEVVKSSRIR--YYEEIFILFKSRRIC 338

Query: 464 E 466
           E
Sbjct: 339 E 339


>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1391

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 446  MFRKFKEGINVLRKEFEIKVQELMHTMKGKILR 544
            +F KFK  ++ L K  ++ V  L+ T++G+I R
Sbjct: 1276 LFAKFKSELDKLTKAVQVNVGNLLSTIEGRIQR 1308


>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
          Length = 170

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 6  RAEMDKEEKLRRITELREKRKKDKIE 83
          R EM  +EK+R+  E RE+RKK K E
Sbjct: 19 RGEMYWKEKIRKAKEKRERRKKRKRE 44


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 12   EMDKEEKLRRITELREKRKKDKIESIRRKQ 101
            EM ++EK ++I E R +RKK++    R+K+
Sbjct: 975  EMTRKEKRKKIKEERNRRKKERKREKRKKK 1004


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 296  MVFERNYVAQNFYRKKVLRKYFEGFKKNHYEFVLKMQVA 412
            + F    + ++ Y++  L  +  GF +  +EFVLK Q+A
Sbjct: 1136 LCFRNTSILRSSYKRPYLPIHVSGFSRCLFEFVLKEQIA 1174


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 27/40 (67%)
 Frame = +3

Query: 21  KEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMAD 140
           +EEK +R+ ELR +R+++ +E  ++KQ  E+ + +  + +
Sbjct: 790 REEKEKRVAELRAERQRELME--KKKQLLEKDKLISTLTE 827


>SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)
          Length = 530

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +3

Query: 42  ITELR---EKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLKKLLEIK- 209
           +TE R   E  KKD     + +  T ++R LRV+ D    RY    Y IR +     I+ 
Sbjct: 210 VTEFRIEIEHYKKDTTIKSKTRLLTNKIRLLRVIYDYVRIRYNYYEYIIRSIYDTSSIQV 269

Query: 210 RYNVE 224
           RY  +
Sbjct: 270 RYTTD 274


>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   ARAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRAL 125
           AR E  ++E+ R+     E+R+K   E  RRK+  E+ R +
Sbjct: 688 ARREDSRDERRRKRERRDERRRKRGAEDDRRKRAKEKKRQM 728


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +2

Query: 335 RKKVLRKYFEGFKKNHYEFVLKMQVAVDYYD---YYVTNFMFRKFKEGINVLRKEFEIKV 505
           +K +LR++   F+ N+ +         DYYD   Y  T+F +   ++ + +++++FEIK+
Sbjct: 81  KKLLLRRHISRFQTNNSK-----NDRTDYYDLMVYIRTDFPYSLIQQRLALIQEDFEIKM 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,040,033
Number of Sequences: 59808
Number of extensions: 322825
Number of successful extensions: 1222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)