Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0683
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    31   1.0  
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical...    29   2.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   3.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    27   9.5  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    27   9.5  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    27   9.5  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    27   9.5  
AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADL 143
           +  +DKEEK+++  E  EK+KK++ E  R++    R   L +  ++
Sbjct: 266 KERIDKEEKIKKEVEEAEKKKKEEKEKRRKEVKKNREEQLSINPEM 311


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMAD-------LHYERYLM 164
           RAE++K+E+     + RE+++K++   + R+   ER R +    +       L  ER   
Sbjct: 321 RAEVEKKEREEEAKKNRERQEKERQAEVERQAELERQRIIEAQREEEEKKRRLEMERRRE 380

Query: 165 VNYAIRPLK-KLLEIKRYNVEMAE-SHYNFQLRK 260
            +  +R ++ +  ++K+  V+M E   +NF  +K
Sbjct: 381 EDEKMRKVQMEKAKVKQMQVQMPEQKKWNFYNQK 414


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 75  KIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLKKLLEIKRYNVEM-AESHYNFQ 251
           K+E    ++   ++  L +   +H+ R L+  + IR  ++++++  + V + ++ H +F 
Sbjct: 100 KVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFS 159

Query: 252 LRKTY 266
           L+  Y
Sbjct: 160 LQSPY 164


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +3

Query: 12  EMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALR 128
           E ++ E++RR  E   K+K+++ E  R+ + +ER+R L+
Sbjct: 429 EEERLEEIRRKKEEERKKKEEEDEKRRKAEESERVRKLK 467


>AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 374 KNHYEFVLKMQVAVDYYDYYVTNFMFRKFKEGINVLRK 487
           K + E V++MQ   D+  Y++ +FM   F+    +L K
Sbjct: 242 KENAEIVVRMQAEFDHSYYFIASFMADHFEHHAKILNK 279


>AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 374 KNHYEFVLKMQVAVDYYDYYVTNFMFRKFKEGINVLRK 487
           K + E V++MQ   D+  Y++ +FM   F+    +L K
Sbjct: 242 KENAEIVVRMQAEFDHSYYFIASFMADHFEHHAKILNK 279


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 176  YQTIKKAIRNKTIQRRDGGVTL*FPTKKNVFLNFMWYTEDMVFE 307
            Y+  +K +R+++  R     T+  PT + V +NF    ED V E
Sbjct: 4816 YEETQKTLRHRSASRESASRTVTAPTNQEVQMNFDKKVEDSVAE 4859


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMR 119
           + E D EE+  R  ELRE  ++D++E  +R++ +   R
Sbjct: 634 KEERDLEERRERNRELREAMRQDEMERRKREEESRHRR 671



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYER 155
           + + +KEE+ RR    +E+RKK K E  R+K+  ER R     A    +R
Sbjct: 124 KKKKEKEEEERR---AKEERKKAKKEKQRQKELEERNRKAEEAASKRRKR 170


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 21  KEEKLRRITELREKRKKDKIESIRRKQYTE--RMRALRVMADLHYERYLMVNYAIRPLKK 194
           +EE+  RI E  EK++K   E  R+KQ  E  R++A   +     E+        R  K+
Sbjct: 530 REEEEARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKE 589

Query: 195 LLEIKR 212
            LEIKR
Sbjct: 590 ELEIKR 595


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 12  EMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYER 155
           E ++EEKLR   E REK++++K   +  K+  +  R        ++E+
Sbjct: 329 EEEREEKLRLKEENREKKRREKARIMELKRLEKVYRTSNARIQENHEK 376


>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 296 MVFERNYVAQNFYRKKVLRKYFEGFKKNHYEFVLKMQV---AVDYYDYYVTNFMFRKFKE 466
           + F R+   Q  Y  K+ R+YF     N + F+   ++      Y D    NF +RK KE
Sbjct: 3   LTFARSLYTQGQYNGKI-REYFYYVSHNGFLFLDDSRMKNFTAAYKDIQFLNFFYRKIKE 61


>U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical
           protein F08D12.6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
 Frame = -3

Query: 407 LAFSKRIHNDSS*ILQSIFLVLFFG--KNFVPHNFFRKPYLLYTT*NLRIRFS*L---EI 243
           ++F+K++ ++SS +   I +  FF    +F  HNF     L+  + +LRIR S L   ++
Sbjct: 181 ISFNKKLISNSSSLNHEILVRNFFSFSASFPEHNFNLNDLLIMNSTHLRIRSSQLAFEDL 240

Query: 242 IM*LRHL 222
            + L+HL
Sbjct: 241 NIFLKHL 247


>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  DKEEKLRRITELREKRKKDKIESIRRKQYTE 110
           D + KLR + +  EK+ KDK +    KQ+ E
Sbjct: 592 DVKVKLRNVDKAEEKKPKDKKQKEAEKQFRE 622


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 21  KEEKLRRITELREKRKKDKIESIRRKQYTER 113
           K  KLR+  E RE+RK+ + E   R++Y +R
Sbjct: 234 KLAKLRKKKERRERRKEQEKEESMRQKYGQR 264


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 21  KEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMAD 140
           KEE  R+  E RE+ KK++   I +K  +++ + L+ +AD
Sbjct: 334 KEEADRKAKEEREREKKER--DIAKKAMSQQRKRLKKLAD 371


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIE-SIRRKQYTERMRA 122
           R E +KEE+   + +L+EK++K K+E     K+  ER RA
Sbjct: 80  RTEREKEEE--ELKKLKEKQEKRKLEREQEEKEMEERRRA 117


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6    RAEMDKEEKLRRITELREKRKKDKIE-SIRRKQYTERMRA 122
            R E +KEE+   + +L+EK++K K+E     K+  ER RA
Sbjct: 914  RTEREKEEE--ELKKLKEKQEKRKLEREQEEKEMEERRRA 951


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRKKDKIE-SIRRKQYTERMRA 122
           R E +KEE+   + +L+EK++K K+E     K+  ER RA
Sbjct: 80  RTEREKEEE--ELKKLKEKQEKRKLEREQEEKEMEERRRA 117


>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = -3

Query: 413 RLLAFSKRIHND------SS*ILQSIFLVLFFG--KNFVPHNFFRKPYLLYTT 279
           +L+ FSK + N       +   L   FL+ FF    +FV H F   P + YTT
Sbjct: 191 KLMLFSKTLQNSGVTKRANRLALLDAFLIFFFDFVPSFVAHEFPNSPLIAYTT 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,135
Number of Sequences: 27780
Number of extensions: 273430
Number of successful extensions: 1077
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)