Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0683
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 69  KDKIESIRRKQYTERMRALRVMADLHYERYL 161
           + + E  R +Q   R + L +  + HY RYL
Sbjct: 265 RSQFERKRGRQTYTRYQTLELEKEFHYNRYL 295


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 341 FFGKNFVPHNFFRKPYLLYTT*NLRIRF 258
           +FGKNF   +F    Y ++   N  +RF
Sbjct: 6   YFGKNFPSTSFILINYFIFLYFNSLVRF 33


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 9   AEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVM 134
           + MD+ +++ R+  +    + DK+ S+ R    +R+  +  M
Sbjct: 439 SSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMDTM 480



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 15  MDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLM 164
           MD+ + + R  ++    + DKI+ + R   T RM  +  M +     Y+M
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMDRMNRM-NRQMNEYMM 546



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 15  MDKEEKLRRITELREKRKKDKIESIRRKQYTERM 116
           MD+ +++ R+  +    + DK+  I R    +RM
Sbjct: 489 MDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRM 522


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 93  RKQYTERMRALRVMADLHYERYL 161
           R+ YT R + L +  + HY RYL
Sbjct: 12  RQTYT-RYQTLELEKEFHYNRYL 33


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 660 LYRIYGKTIN*LLQRKCDHPP 598
           L   YG+ ++ L   KC+H P
Sbjct: 400 LLSAYGELLHALTSGKCEHRP 420


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 168 NYAIRPLKKLLEIKRYNVE 224
           N  +  L K LEIK YN++
Sbjct: 92  NIKLYGLTKNLEIKNYNID 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,598
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)