Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0683
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 33 0.23
At1g33870.1 68414.m04199 avirulence-responsive protein, putative... 31 0.95
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 1.3
At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ... 29 2.2
At5g53800.1 68418.m06685 expressed protein 29 3.8
At5g50840.2 68418.m06299 expressed protein 29 3.8
At5g50840.1 68418.m06298 expressed protein 29 3.8
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si... 28 5.0
At4g18570.1 68417.m02749 proline-rich family protein common fami... 28 5.0
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 28 6.7
At5g49210.2 68418.m06091 expressed protein 27 8.8
At5g49210.1 68418.m06090 expressed protein 27 8.8
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 27 8.8
At5g11500.1 68418.m01342 expressed protein contains Pfam profile... 27 8.8
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 27 8.8
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRR-KQYTERMR 119
+ + DKEEK ++ E +EK KKDK+E ++ K+ E+ R
Sbjct: 78 KEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKER 116
>At1g33870.1 68414.m04199 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 252
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 12 EMDKEEKLRRITELREKRKKDKIESIRR--KQYTERMR 119
E++ +EK+RR+T+L E+R K E+ R ++ E MR
Sbjct: 212 ELEHDEKMRRMTQLLERRLKQNSEAHERAMREMREAMR 249
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYE 152
+A +++EEK R+I E REK + ++ ++ ++ E+ R ++ +L +
Sbjct: 665 KAALEQEEKERKIKEAREKAENER-RAVEAREKAEQERKMKEQQELELQ 712
>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
2) {Arabidopsis thaliana}
Length = 1629
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 374 KNHYEFVLKMQVAVDYYDYY 433
KNH ++K AVD+YDYY
Sbjct: 412 KNHPTLMIKYPEAVDFYDYY 431
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/65 (24%), Positives = 37/65 (56%)
Frame = +3
Query: 18 DKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLKKL 197
D+E++ + ELRE++K++++ +++R +A++ A L E ++ Y I ++
Sbjct: 281 DEEQRRLEMQELRERQKEEEVLALKRSMEGGMAQAMKEQARLKEE--MVYLYKIGDMEGA 338
Query: 198 LEIKR 212
I+R
Sbjct: 339 AAIQR 343
>At5g50840.2 68418.m06299 expressed protein
Length = 405
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 15 MDKEEKLRRITELREKRKKDKIESIRRKQYTER 113
+++ E+L+++ E + K++KDK+ES+ R ER
Sbjct: 360 VEERERLKKLLE-KTKKQKDKLESLCRSLQAER 391
>At5g50840.1 68418.m06298 expressed protein
Length = 404
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 15 MDKEEKLRRITELREKRKKDKIESIRRKQYTER 113
+++ E+L+++ E + K++KDK+ES+ R ER
Sbjct: 359 VEERERLKKLLE-KTKKQKDKLESLCRSLQAER 390
>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
similar to 17.9 kDa heat-shock protein [Helianthus
annuus] GI:11990130; contains Pfam profile PF00011:
Hsp20/alpha crystallin family; supporting cDNA
gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
small heat shock-like protein (RTM2) GI:7407072, small
heat shock-like protein [Arabidopsis thaliana]
GI:7407073
Length = 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 24 EEKLRRITELREKRKKDKIESIRRKQYTERMRAL 125
EEKL + E +K K +E IRRK+ T + L
Sbjct: 289 EEKLGNLVEKEKKMGKGIMEKIRRKEITSEEKKL 322
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRR 95
R E D+ E++RR E REK + +I +R+
Sbjct: 153 RREFDRSEEMRRECETREKEMEAEIVELRK 182
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 21 KEEKLR---RITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPLK 191
K+EK R E E R+K + + +RK ER A + + L E+ + +N R LK
Sbjct: 492 KKEKARLQAEAKEAEEARRKAEAQEAKRKLELEREAARQAL--LEMEKSVEINENTRFLK 549
Query: 192 KLLEIKRYNVE 224
L +K N +
Sbjct: 550 DLELLKTVNTD 560
>At5g49210.2 68418.m06091 expressed protein
Length = 195
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 9 AEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPL 188
A D ++ R++ +LR K K+ + RK+Y + LRV E L+ A
Sbjct: 55 APSDPKDAERKLAQLRRDYAK-KVR-VYRKEYIHEIEMLRVEKQRKDEARLLAERAANEE 112
Query: 189 KKLLEIKRYNVEMAE 233
++LL+ + V E
Sbjct: 113 RRLLKAEAAKVRAEE 127
>At5g49210.1 68418.m06090 expressed protein
Length = 195
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 9 AEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALRVMADLHYERYLMVNYAIRPL 188
A D ++ R++ +LR K K+ + RK+Y + LRV E L+ A
Sbjct: 55 APSDPKDAERKLAQLRRDYAK-KVR-VYRKEYIHEIEMLRVEKQRKDEARLLAERAANEE 112
Query: 189 KKLLEIKRYNVEMAE 233
++LL+ + V E
Sbjct: 113 RRLLKAEAAKVRAEE 127
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 18 DKEEKLRRITELREKRKKDKIESIRRKQYTER 113
+KEE RRI + EK+KK++ E I+RK+ E+
Sbjct: 466 EKEEAKRRIED-EEKKKKEE-EEIKRKKREEK 495
>At5g11500.1 68418.m01342 expressed protein contains Pfam profile
PF05670: Domain of unknown function (DUF814)
Length = 215
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 6 RAEMDKEEKLRRITELREKRKKDKIESIRRKQYTERMRALR 128
R ++ E+ R LREK+K+++I+ + +++ +E MR+ +
Sbjct: 147 REAVNAAERAERKQHLREKKKREEIDRLEKERQSE-MRSYK 186
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 425 DYYVTNFMFRKFKEGINVLRKEFEIKVQELMHTMK 529
DY + + F++G RK E+K EL+HT+K
Sbjct: 134 DYLFLLYFSKPFRKGKRKNRKS-EVKTDELVHTLK 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,515
Number of Sequences: 28952
Number of extensions: 238236
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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