Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0682
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    33   0.041
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    29   0.51 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.6  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   4.7  

>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 24  LLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKI 203
           LL     AS+    E  ++H ++ +C + ETL ++    V  +  V  +W+  C+S   +
Sbjct: 186 LLGATVHASLQMTEENPVSHAVLYDC-SQETLKKISSAQVPIVC-VSPKWVLACYSSKYL 243

Query: 204 INERDYL 224
           ++E  YL
Sbjct: 244 VDEEMYL 250


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 30  AKMYGASVC-DANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKII 206
           A  +GA V  D + P  TH+I  + I +E +   K   +  I  V + WL E  SQ K +
Sbjct: 517 AMSFGAEVVLDFSVPP-THLIAAK-IRTEKVK--KAVSMGNIKVVKLNWLTESLSQWKRL 572

Query: 207 NERDYL 224
            E DYL
Sbjct: 573 PESDYL 578


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 346  KSGITVVMVKTVIFIGIFKRLQYNSK*H 429
            ++G+T+  V  VI  G+ + ++YNS+ H
Sbjct: 971  ETGVTIPDVTCVIDTGVHREMRYNSRRH 998


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 72  SLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINERDYLF 227
           S+TH+     + ++    + K  + +I  +  +WL +C    ++I++  YLF
Sbjct: 146 SMTHLFTYSGMGAKCKKVLDKPSL-SIKLIHPQWLLDCLQFGQLIDQDPYLF 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,861
Number of Sequences: 5004
Number of extensions: 61780
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)