Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0682
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232...    30   1.6  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    30   2.1  
03_02_0873 - 11991947-11992059,11992148-11992337,11992437-119926...    29   2.8  
05_04_0105 - 18026373-18026561,18027169-18027356,18027634-180276...    28   8.6  

>03_02_0726 +
           10722759-10722857,10722969-10723058,10723141-10723245,
           10723597-10723698,10724721-10724805,10725281-10725365,
           10725473-10725517,10725685-10728672,10728839-10729055,
           10729193-10729765
          Length = 1462

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 6   RDDLNVLLAKMYGASVCDANEPSLTHVIVPECIAS--ETLNEMKKKHVDTISFVGMRWLE 179
           R+D+  +++ M        N   +TH+I  +      E   + K K    I  V  RWLE
Sbjct: 128 REDIMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKLVNHRWLE 187

Query: 180 ECFSQAKIINERDY 221
           +C    KI+   DY
Sbjct: 188 DCLKCWKILPVDDY 201


>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 332 CWDQCY--RYIQFLIKKGIMRLLYY*NNFKSRLDSALKQIVSFVDNFSLRKTFL 177
           C  +CY  R +  L+KK ++RL  +     +RLD+ L+++   V+   LR T L
Sbjct: 478 CTQRCYVNRVLPALLKKHVVRLTKFDYRLANRLDTDLQKLRCRVNYHGLRFTGL 531


>03_02_0873 -
           11991947-11992059,11992148-11992337,11992437-11992654,
           11993409-11993503,11994201-11994406,11994658-11994750,
           11994904-11994960,11995070-11995198,11996377-11996745
          Length = 489

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 311 YIQFLIKKGIMRLLYY*NNFKSRLDSALKQIVSFVDNFSLRKTFLEPPHTYKRYGIDMF 135
           Y++ L+ KG    LY  +  +  L +A  +I+   +    R   LE  H   RYG D+F
Sbjct: 268 YVKELLLKGTTYYLYVHSYLRYGLLAARAEILKAGEGNDYRNCMLEGHHGQYRYGDDIF 326


>05_04_0105 -
           18026373-18026561,18027169-18027356,18027634-18027692,
           18027980-18028089,18028297-18028419
          Length = 222

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 159 VGMRWLEECFSQAKIINERDYLF 227
           V  +WL+E F + K + E +Y+F
Sbjct: 82  VSPKWLKESFKKGKFVGEAEYVF 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,326
Number of Sequences: 37544
Number of extensions: 328445
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)