Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0682
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein.               36   0.15 
BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II ...    36   0.15 
BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II ...    36   0.15 
AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II bi...    36   0.15 

>D87448-1|BAA13389.1| 1550|Homo sapiens KIAA0259 protein.
          Length = 1550

 Score = 35.9 bits (79), Expect = 0.15
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 9   DDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECF 188
           D L  L+    G      NE  +THVIV +    + L +   K       VG +WL ECF
Sbjct: 403 DKLRRLINSGGGVRFNQLNE-DVTHVIVGDY--DDELKQFWNKSAHRPHVVGAKWLLECF 459

Query: 189 SQAKIINERDYL 224
           S+  +++E  Y+
Sbjct: 460 SKGYMLSEEPYI 471


>BC151237-1|AAI51238.1| 1435|Homo sapiens topoisomerase (DNA) II
           binding protein 1 protein.
          Length = 1435

 Score = 35.9 bits (79), Expect = 0.15
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 9   DDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECF 188
           D L  L+    G      NE  +THVIV +    + L +   K       VG +WL ECF
Sbjct: 288 DKLRRLINSGGGVRFNQLNE-DVTHVIVGDY--DDELKQFWNKSAHRPHVVGAKWLLECF 344

Query: 189 SQAKIINERDYL 224
           S+  +++E  Y+
Sbjct: 345 SKGYMLSEEPYI 356


>BC126209-1|AAI26210.2| 1435|Homo sapiens topoisomerase (DNA) II
           binding protein 1 protein.
          Length = 1435

 Score = 35.9 bits (79), Expect = 0.15
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 9   DDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECF 188
           D L  L+    G      NE  +THVIV +    + L +   K       VG +WL ECF
Sbjct: 288 DKLRRLINSGGGVRFNQLNE-DVTHVIVGDY--DDELKQFWNKSAHRPHVVGAKWLLECF 344

Query: 189 SQAKIINERDYL 224
           S+  +++E  Y+
Sbjct: 345 SKGYMLSEEPYI 356


>AB019397-1|BAA34202.1| 1435|Homo sapiens DNA topoisomerase II
           binding protein protein.
          Length = 1435

 Score = 35.9 bits (79), Expect = 0.15
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 9   DDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECF 188
           D L  L+    G      NE  +THVIV +    + L +   K       VG +WL ECF
Sbjct: 288 DKLRRLINSGGGVRFNQLNE-DVTHVIVGDY--DDELKQFWNKSAHRPHVVGAKWLLECF 344

Query: 189 SQAKIINERDYL 224
           S+  +++E  Y+
Sbjct: 345 SKGYMLSEEPYI 356


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,859,747
Number of Sequences: 237096
Number of extensions: 1956244
Number of successful extensions: 2413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2413
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)