Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0682
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AL132902-11|CAC70125.2|  205|Caenorhabditis elegans Hypothetical...    29   3.3  
AL132902-12|CAJ90508.1|   76|Caenorhabditis elegans Hypothetical...    28   5.8  

>Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical
           protein W04A8.1 protein.
          Length = 667

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +3

Query: 6   RDDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEEC 185
           R  L+  L +M GA +    +   TH++V      + + E   +  +    V ++W++EC
Sbjct: 120 RHHLSKKLIEM-GAEIQKTIDNRTTHIVVDRYADEKLVGEAMSRKPEPPMMVDVKWIQEC 178

Query: 186 FSQAKIINERDY 221
               +   E D+
Sbjct: 179 LDNRQKCKENDF 190


>AL132902-11|CAC70125.2|  205|Caenorhabditis elegans Hypothetical
           protein Y71A12B.13a protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 6   RDDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEEC 185
           R  L+  L +M GA V  + +   TH++V      + + E   +  +    V ++W++EC
Sbjct: 120 RHHLSEKLIEM-GAEVQKSIDNRTTHIVVDRYAEEKLVGEAMSRKPEPPMLVDVKWIQEC 178

Query: 186 FSQAKIINE 212
               +   E
Sbjct: 179 LDNRQKCKE 187


>AL132902-12|CAJ90508.1|   76|Caenorhabditis elegans Hypothetical
           protein Y71A12B.13b protein.
          Length = 76

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/57 (21%), Positives = 25/57 (43%)
 Frame = +3

Query: 42  GASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINE 212
           GA V  + +   TH++V      + + E   +  +    V ++W++EC    +   E
Sbjct: 2   GAEVQKSIDNRTTHIVVDRYAEEKLVGEAMSRKPEPPMLVDVKWIQECLDNRQKCKE 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,227
Number of Sequences: 27780
Number of extensions: 337480
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)