Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0682
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 157 NDMVSTCFFFISFNVSEAMHSGTMT*VKLGSFAS 56
           N  V+TC  F   N+S    SGT   ++L   AS
Sbjct: 713 NRNVTTCNMFRKTNLSGDSSSGTTLLLELDDIAS 746


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 370 VKTVIFIGIFKRLQYNSK*HQKSILCLT 453
           V  ++ +GI+ RL   ++ H KSI  +T
Sbjct: 203 VPCIVMLGIYCRLYCYAQKHVKSIRAVT 230


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 405 SFKYTYKNNC 376
           ++KY Y NNC
Sbjct: 95  NYKYNYNNNC 104


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 93  NYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 93  NYKYNYNNNNYNNN 106


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 95  NYKYNYNNNNYNNN 108


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 95  NYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 95  NYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 95  NYKYNYNNNNYNNN 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 405 SFKYTYKNNCFNHD 364
           ++KY Y NN +N++
Sbjct: 328 NYKYNYNNNNYNNN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,698
Number of Sequences: 438
Number of extensions: 4813
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)