Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0682
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 33 0.14
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put... 31 0.58
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 31 0.77
At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR ... 29 3.1
At1g31950.1 68414.m03927 terpene synthase/cyclase family protein... 29 3.1
At5g03330.2 68418.m00285 OTU-like cysteine protease family prote... 28 5.4
At5g03330.1 68418.m00284 OTU-like cysteine protease family prote... 28 5.4
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 28 7.2
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 28 7.2
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat... 27 9.5
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id... 27 9.5
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id... 27 9.5
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 42 GASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINERDY 221
GAS A S+TH++ C E K T+ V RW+EEC + + ++E Y
Sbjct: 27 GASYVGAMSRSITHLV---CWKFEGKKYDLAKKFGTV-VVNHRWVEECVKEGRRVSETPY 82
Query: 222 LF 227
+F
Sbjct: 83 MF 84
>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 882
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 536 FDLRLSGKLFGGPLI---LVIALVQTSDPPSLHFGNCNLFID*LTRQT 670
F++ L+GKLF GP++ L I+ + + P + G CNL + R T
Sbjct: 294 FNMLLNGKLFFGPVVPPKLAISTILSVSPNTCEGGECNLQLIRTNRST 341
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 135 KHVDTISFVGMRWLEECFSQAKIINERDY 221
K + I V RWLE+C K++ E DY
Sbjct: 128 KRIKRIKLVNHRWLEDCLKNWKLLPEVDY 156
>At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 99 CIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINERD 218
C A+E + E + H TI VG ++EE + +I ERD
Sbjct: 438 CWAAEGILEPRHYHGQTIRDVGESYIEELVRRNMVIAERD 477
>At1g31950.1 68414.m03927 terpene synthase/cyclase family protein
similar to sesquiterpene synthases
[GI:11934937][Lycopersicon hirsutum],
[GI:11934933][Lycopersicon esculentum]; contains Pfam
profile: PF01397: Terpene synthase family
Length = 606
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 631 SEVKRGRVASLY*CNYEY*RPTKQFPAQAQIKNTLYLF*KIFISCENRNNNYKRGVMVKL 452
+E+ RG VA+ C + TK+ ++ K +Y + N +++ R V+++
Sbjct: 508 TEINRGEVANGLNCYMKQYGVTKEEASRELRKMYVYRKKVVVEEFMNSHDHVPRQVLLRC 567
Query: 451 LNIIWIFDV 425
LNI IFDV
Sbjct: 568 LNIARIFDV 576
>At5g03330.2 68418.m00285 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 221 IVSFVDNFSLRKTFLEP-PHTYKRYGIDM 138
+VS +N S+ + FL P P+TY YGI+M
Sbjct: 1 MVSHEENTSIVEWFLGPHPYTYPPYGIEM 29
>At5g03330.1 68418.m00284 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 221 IVSFVDNFSLRKTFLEP-PHTYKRYGIDM 138
+VS +N S+ + FL P P+TY YGI+M
Sbjct: 1 MVSHEENTSIVEWFLGPHPYTYPPYGIEM 29
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 84 VIVPECIASETLNEMKKKHVDTISFV 161
V + EC AS E+KKK+VD S V
Sbjct: 730 VCIWECAASYLTEEVKKKYVDAYSIV 755
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 93 PECIASETLNEMKKKHVDTISFVGMRWLEE 182
PEC+ L + KK++ ++ + WL E
Sbjct: 678 PECVIFNELMQTSKKYIKNLTIIDSLWLSE 707
>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
/ EDGP-related similar to extracellular dermal
glycoprotein EDGP precursor [Daucus carota] GI:285741
Length = 405
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 214 LSLIILACEKHSSSHLIPTNDMVSTCFFFISFNVSEAMHSGTMT*VKLGSFASHTDAPYI 35
LS+ K +S +L+P T F+ +FNV A S + LG+ + D +
Sbjct: 12 LSIFAAIALKSNSQYLLPITKHEPTNLFYTTFNVGSAAKSPVNLLLDLGTNLTWLDCRKL 71
Query: 34 LARSTFK 14
+ S+ +
Sbjct: 72 KSLSSLR 78
>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 120 NEMKKKHVDTI--SFVGMRWLEECFSQAKIINERDYL 224
N K + V+T + + W+ EC++Q K+++ YL
Sbjct: 109 NTPKFRQVETNGGTIISKEWITECYAQKKLVDIEQYL 145
>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 120 NEMKKKHVDTI--SFVGMRWLEECFSQAKIINERDYL 224
N K + V+T + + W+ EC++Q K+++ YL
Sbjct: 109 NTPKFRQVETNGGTIISKEWITECYAQKKLVDIEQYL 145
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,050
Number of Sequences: 28952
Number of extensions: 294493
Number of successful extensions: 485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -