Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0681
         (666 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005035B1 Cluster: UPI00005035B1 related cluster; n...    34   2.7  
UniRef50_UPI0001509EA1 Cluster: hypothetical protein TTHERM_0050...    33   6.2  

>UniRef50_UPI00005035B1 Cluster: UPI00005035B1 related cluster; n=1;
           Rattus norvegicus|Rep: UPI00005035B1 UniRef100 entry -
           Rattus norvegicus
          Length = 1057

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 120 SSKRGDYVGIRCSKCYNIF--CSFESD**RPRAAVTTDDH*YVSSI 251
           SS  G+ + + C K   ++  C  ESD  +P   VTTDDH YV  +
Sbjct: 860 SSYAGELILLECMKLLPVYLNCVLESDVLQPGPEVTTDDHAYVRQL 905


>UniRef50_UPI0001509EA1 Cluster: hypothetical protein
           TTHERM_00502560; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00502560 - Tetrahymena
           thermophila SB210
          Length = 436

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -2

Query: 611 HCDSICGYIMATIKRNIFWLTDIWHLLLLCELKT*YKFKYIYLSSWFFFIS 459
           H DS+  Y  +T+   ++ +  ++H L + E  + Y F Y+ L+SWFF++S
Sbjct: 193 HYDSLIKY--STLLLIVYLVGHLYHRLQIMESGSKYVFLYL-LTSWFFYVS 240


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,263,606
Number of Sequences: 1657284
Number of extensions: 10426356
Number of successful extensions: 21296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21294
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)