Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0681
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.9  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   5.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 246 TKHTNDRQWSPLLVDVINLTRRNKICCS 163
           T   N   WSP  +D   L +    C S
Sbjct: 211 TNSANSSIWSPASIDSFTLEQHRSWCSS 238


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 357 NCMVRHKYTKHKHASSNNV 301
           NC+V + YTK+    +N +
Sbjct: 54  NCLVLNVYTKNLRTDTNRI 72


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 164 AFTTPYAHIVASFRGHN 114
           AF   YAH  A + GH+
Sbjct: 439 AFHNQYAHYPAEYYGHH 455


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 374 CRCFIIIVWLDTSTLSTSMQAATMWNKSDKRV 279
           C  F+I++ L  + +   M    +WN  + RV
Sbjct: 265 CPRFLIMLALSYTVIQEVMLFTILWNCQNTRV 296


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +3

Query: 54  FISYLLNLSICLGHTTTINEIMSSKRGDYVGIRCSKCYN 170
           F  +L+       HTTT +    + R      RC + +N
Sbjct: 269 FTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQLFN 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,138
Number of Sequences: 336
Number of extensions: 3341
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)