Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0681
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    29   4.4  
08_01_0102 - 735359-735370,735371-735455,735531-735616,735697-73...    28   7.7  

>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 445 LRFTIEIKKNHEDR*IYLNLYYVFSSHNNKRCHMSVNQKIFLFIV--AIIYPQIESQWEN 618
           +R +  +++  ED+ +   L+  F+SH+            F+ +V  A ++ +I   WE 
Sbjct: 409 MRLSDGLERIREDK-LLSELHPSFTSHHGDLARSEFLDTAFVTVVTEAFVHTEISLVWEQ 467

Query: 619 NAYFNCH 639
           + + +CH
Sbjct: 468 SPFSHCH 474


>08_01_0102 -
           735359-735370,735371-735455,735531-735616,735697-735779,
           736790-737048,737132-737300,738554-738698,738782-739004
          Length = 353

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 299 NKSDKRVICVFFYPLMDRRNILMIVSGHRCSWTSSI 192
           +K   R  C+F++ L      L   SG RC+W S++
Sbjct: 121 DKLGPRQACIFYWMLQLAVGALKSFSGLRCAWISNL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,573
Number of Sequences: 37544
Number of extensions: 258112
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)