Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0681
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)          30   1.9  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.9  

>SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)
          Length = 269

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 75  LSICLGHTTTINEIMSSKRGD 137
           L ICLGH T +  +++ +RGD
Sbjct: 198 LQICLGHVTLVTGVVTQRRGD 218


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 99   TTINEIMSSKRGDYVGIRCSKCYNIFCSF 185
            TT +E   +K+G   G +CSKC +I+ SF
Sbjct: 1858 TTDHEQKPTKQGLPKGYKCSKCSDIYQSF 1886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,287,732
Number of Sequences: 59808
Number of extensions: 334445
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)