Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0681
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z83120-1|CAB05583.1|  837|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    28   6.8  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    28   6.8  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    27   9.1  

>Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical
           protein C41G6.10 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -2

Query: 554 LTDIWHLLLLCELKT*YKFKYIYLSSWFFFISIVNLSDTVNT 429
           + DI+H L+  + +   +F+Y YL++W      + + +T+ +
Sbjct: 166 MLDIFHPLVSTKFRNLPEFQYYYLNTWMLIFFTLTIFETMKS 207


>Z83120-1|CAB05583.1|  837|Caenorhabditis elegans Hypothetical
           protein R06A4.2 protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 359 IIVWLDTSTLSTSMQAATMWNKSDKRVICVFFYPL-MDRRNILMIV 225
           I  W D   +S S ++AT W+   ++++C   + + + +R IL ++
Sbjct: 398 IAFWRDFVKVSRSSKSATNWSSHFRKIMCPALHEMPLHKRTILYLL 443


>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
           protein ZK637.9b protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 368 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 279
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 368 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 279
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 368 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 279
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
 Frame = -2

Query: 578 TIKRNIFWLTDIWHLLLLCELKT*YK---FKYIYLSSWFFFISIVNLSDTVNTKPMFLNX 408
           T+ R I+++   + LL LC L   ++    +Y+  +  F  +++  +     TK ++ + 
Sbjct: 100 TVMRTIYYVISPFQLLALCSLNPHFQSSMIRYLNGTETFNVVTLKTIGGDTRTKVLYEDL 159

Query: 407 XXXXXXXX*LW-----CRCFIIIV 351
                     W     CRC I ++
Sbjct: 160 PDPSELRWLSWMYFRWCRCHIAVI 183


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 112 KLCPLNEATMWAYGVVNATTYFVPSSQIDDVHEQR*PLTIISMFRLSING 261
           ++  L   ++WAYG  ++T Y  P ++ID ++E    L   S   L + G
Sbjct: 349 EILELEGDSVWAYGDASSTAY--PLAKIDTINETTGELNEASALSLVVYG 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,429
Number of Sequences: 27780
Number of extensions: 268509
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)