Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0680
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    29   0.64 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    28   1.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   1.5  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   3.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   4.5  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.9  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 385 SLTLMXRHSFSSSKRTTLKPSDKXLISTTRKPLTSSATTGKKCRS 519
           SL++  R    SSKR ++K SD+   S+   PL+ S     K  S
Sbjct: 10  SLSIRRRQRRGSSKRISMKESDEESDSSENHPLSESLNKKSKSES 54


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 206 YWLVTTLSVLPMDLVR 253
           YW++TTLS+ P DLVR
Sbjct: 108 YWMMTTLSLEPGDLVR 123


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 139 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 50
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 149 NTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVRSRI 262
           N EP    + +  S    +  ++TTL+V P+D+V++R+
Sbjct: 17  NAEPDVKPIAKMLSACVGS--VITTLTVTPLDVVKTRL 52


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 79  EDIGMNAYYYYFHSHLPFWWTSEKYG 156
           +DIGM AY       L F W S+++G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 423 QKDHFEAFGQKXDFHDPKAINFVGNYWQEMQICMEKKSQ 539
           QK+ F A  +K   H     + V N W ++Q+   ++SQ
Sbjct: 248 QKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPNEQSQ 286


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 115  HSHLPFWWTSEKYGALKERRGEV 183
            HSHLPF +T E +  +K R G V
Sbjct: 1085 HSHLPFKFTPESF--IKIRNGNV 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,227
Number of Sequences: 5004
Number of extensions: 51319
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)