Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0680
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 28 6.1
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 28 6.1
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 8.1
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 8.1
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 28 8.1
03_03_0166 - 15027065-15028465 28 8.1
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 209 WLVTTLSVLPMDLVRSRILMVLSDKDWILSIDAN*VYT 322
WL + P+D+++ I LS K W L I+ +T
Sbjct: 807 WLYNLIFYFPLDIIKFLIRYALSGKAWDLVIEQRIAFT 844
>03_02_0932 +
12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 466 TTRKPLTSSATTGKKCRSVWRRSHKRLPTFL 558
+T K SS T K C VW HK+L T L
Sbjct: 121 STYKLECSSERTDKSCIKVWLEKHKKLHTAL 151
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 49 NEEQRLTYFTEDIGMNAYYYYFHSHLPFWWTSEKYGALKERRGE 180
N EQ +T + I ++A+ + H WWTS+KY K +RG+
Sbjct: 118 NFEQYMTCKLDWINVDAWKCFCH-----WWTSDKYKE-KRKRGQ 155
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 403 RHSFSSSKRTTLKPSDKXLISTTRKPLTSSATTGKKCRSVWRRSHKRLPTFL 558
RH K ++L+ + K LIST ++S +CR V ++ L ++L
Sbjct: 58 RHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYL 109
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 209 WLVTTLSVLPMDLVRSRILMVLSDKDWILSIDAN*VYT 322
WL + P+D+++ I LS K W L I+ +T
Sbjct: 876 WLYNLVFYFPLDIIKFLIRYALSGKAWDLVIEQRIAFT 913
>03_03_0166 - 15027065-15028465
Length = 466
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 134 GGHQKNTEPLKSVVERFTSTSTSNYWLVTTLSVLPMDLVR-SRILMV 271
G +++ EPL+ + R+ +TS S+ W V + L R ++LMV
Sbjct: 360 GLEERDVEPLRMTLHRWGNTSASSVWYVLSYMEAKGRLRRGDKVLMV 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,348
Number of Sequences: 37544
Number of extensions: 312645
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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