Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0680
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    30   1.5  
SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +3

Query: 234  YQWTW*DPEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTXXNYXRVXFLDTY 398
            YQW   DP    Y+P+    YP MLT  +  AQ    Y       Y  V   DT+
Sbjct: 1516 YQWYRRDPITPQYTPLSNEIYP-MLTIHSARAQHQGGYRCQVSNRYGDVWSGDTH 1569


>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
 Frame = +3

Query: 291 YYPLMLTKFTPFAQR----PDYYNLHTXXNYXR-VXFLDTY-EXTFVQFLQKDHFEAFGQ 452
           Y PL L +F+ F ++    PD Y+ H   +      F D   E   ++ +     E  G 
Sbjct: 173 YQPLRLVEFSAFLEQQRLDPDTYHKHLFVHLGHNTNFSDPLLEAVDIRQIYDKFPEKKGG 232

Query: 453 KXDFHD--PKAINFVGNYWQEMQICMEKKSQKITNVLTTY 566
             D +D  P+A+ F+  +W ++   +  ++     V +TY
Sbjct: 233 LKDMYDKGPQAVFFLVKFWADLNTNIHDETGAFYGVSSTY 272


>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 329 CEGCKLS*HQWIVSSLYRRVP*EFGIL 249
           CEG ++  H W+   L  RV  +FG++
Sbjct: 212 CEGIEMGDHLWVARYLLHRVAEDFGVI 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,577,542
Number of Sequences: 59808
Number of extensions: 374684
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)