Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0680
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    28   5.5  
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    28   5.5  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 329 CEGCKLS*HQWIVSSLYRRVP*EFGILPS 243
           CEG ++    W+   L +RV  EFG++ S
Sbjct: 211 CEGIQMGDQLWVARYLLQRVAEEFGVIAS 239


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 329 CEGCKLS*HQWIVSSLYRRVP*EFGILPS 243
           CEG ++    W+   L +RV  EFG++ S
Sbjct: 214 CEGIQMGDQLWVARYLLQRVAEEFGVIAS 242


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 415 SSSKRTTLKPSDKXLISTTRKPLTSSATTGKKCRS 519
           SS   TT+ P    + +TT KP+T   TT     S
Sbjct: 217 SSEFTTTMTPESSSVTTTTAKPVTEPITTSTSSTS 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,736
Number of Sequences: 27780
Number of extensions: 281062
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)