Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0680
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ...    31   0.73 
At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putativ...    28   6.8  
At5g62670.1 68418.m07865 ATPase, plasma membrane-type, putative ...    27   8.9  

>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 931

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 209 WLVTTLSVLPMDLVRSRILMVLSDKDWILSIDAN*VYTLR 328
           WL + L+ +P+DL++  I  VLS K W+  ++    +T +
Sbjct: 806 WLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTK 845


>At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putative /
           proton pump 2, putative / proton-exporting ATPase,
           putative strong similarity to SP|P19456 ATPase 2, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 948

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 209 WLVTTLSVLPMDLVRSRILMVLSDKDWILSIDAN*VYTLR 328
           WL + ++  P+D+ +  I  +LS K W+   +    +T++
Sbjct: 824 WLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMK 863


>At5g62670.1 68418.m07865 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H(+)-transporting ATPase from Nicotiana plumbaginifolia
           [SP|Q08435, SP|Q08436], Lycopersicon esculentum
           [GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
           contains InterPro accession IPR001757: ATPase, E1-E2
           type
          Length = 956

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 209 WLVTTLSVLPMDLVRSRILMVLSDKDWILSIDAN*VYT 322
           WL   +  +P+D+++  I   LS + W L I+    +T
Sbjct: 832 WLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFT 869


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,095
Number of Sequences: 28952
Number of extensions: 260769
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)