Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0679
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q84FL3 Cluster: AdmJ; n=2; Gammaproteobacteria|Rep: Adm...    33   4.9  

>UniRef50_Q84FL3 Cluster: AdmJ; n=2; Gammaproteobacteria|Rep: AdmJ -
           Enterobacter agglomerans (Erwinia herbicola) (Pantoea
           agglomerans)
          Length = 538

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -2

Query: 590 KEIDSNK*YFLLTYIDTLLTSPIHYLFTKIFMRIFLINLKFSYQIQDFLLE-QSRKFDRT 414
           K  D+NK Y +L+Y  TLL +P     + +  R+    L   + I D L + +S K DR 
Sbjct: 452 KHTDNNKDYLVLSYESTLLLNP-EECISLLGKRLPKYMLPNVFAIFDSLPKLRSAKLDRN 510

Query: 413 GIDSSDLNAEKMRSK 369
            +  S +NAE +RSK
Sbjct: 511 KVKDS-VNAEFIRSK 524


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,367,646
Number of Sequences: 1657284
Number of extensions: 11592333
Number of successful extensions: 26919
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26915
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)