Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0679
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    28   1.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   2.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.5  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 114 SFVKHFILYIGSCVVKYSGTLERAWVR 194
           SFV   +L++G CV + +  LER W +
Sbjct: 264 SFVYQCLLFVGKCVNRVTPYLERFWFK 290


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 283 VPDVIRYIIHNKTK*QFLLIICMSTVVSASRTHALSNVPEYFTTHDPIYR 134
           V D   Y  + K    + ++I  + + S+     LSN+  + +TH P YR
Sbjct: 212 VNDAAEYGDNKKPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYR 261


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 120 RKISASRHRTTVDIKYSHQIIKKNKQLSIYDLN 22
           +K +A ++RTT +IK +   I+KNK+  +  LN
Sbjct: 232 KKNNAMQNRTTSNIKSNASAIEKNKETILNALN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,530
Number of Sequences: 5004
Number of extensions: 54747
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)