Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0679
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509...    32   0.48 
11_06_0545 + 24839536-24843421,24843871-24844310                       29   2.6  
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690...    28   6.0  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   7.9  
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719...    28   7.9  

>01_06_0667 -
           31048987-31049134,31049630-31049865,31050720-31050926,
           31051005-31051197,31051282-31051652
          Length = 384

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 523 IGDVNKVSI*VNKKYYLLESISFRNSSVVCRPG 621
           +G  +  S  VN +Y+L  +I+F+N+S V +PG
Sbjct: 165 LGTYSSASFAVNAQYFLARNITFKNTSPVPKPG 197


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 608 TTEEFRKEIDSNK*---YFLLTYIDTLLTSPIHYL 513
           TTE F  E+ SNK     FLL Y   L   P+HYL
Sbjct: 220 TTESFLTELMSNKADATAFLLEYTKELFGGPLHYL 254


>01_01_0880 +
           6903535-6903932,6904931-6905022,6905601-6905680,
           6905885-6905926,6906001-6906128,6906530-6906710,
           6906801-6906979,6907469-6907717,6907950-6908193
          Length = 530

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 349 ASRSILFFERIFSAFRSDESIPVLSNFLDCSNKKS 453
           ASR+ ++F+RI S  +  E+ PV   F+D ++  S
Sbjct: 131 ASRTPMWFKRILSPLKKSENGPVFRFFMDLNDAVS 165


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 173 IRESMGPRGADDSRHAND*EKLLFSFIVNNVANNIWY*RLVSVTSNYIYNILLCIYCTKR 352
           +R  +   G   S  +ND + L+ S +  ++ N  ++  L  +    ++NIL C + T  
Sbjct: 738 LRNMLSQLGEQKSAESNDVQYLI-SKLREHLNNKRYFIILDDLWDESVWNILSCAFPTNS 796

Query: 353 HGA 361
           HG+
Sbjct: 797 HGS 799


>03_02_0296 +
           7191455-7191615,7192031-7192071,7192156-7192741,
           7193307-7193444,7193572-7193728,7193848-7194332,
           7194867-7195086
          Length = 595

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 305 SNYIYNILL--CIYCTKRHGAFCFLSAFSPHLGLTNRFLFCQTF*IVLIRNL-EFDMKTL 475
           +N++ N+LL  C++C      FCFL+  +     T    F     IVLI  L  F +  L
Sbjct: 359 TNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTFPLLVL 418

Query: 476 G 478
           G
Sbjct: 419 G 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,327
Number of Sequences: 37544
Number of extensions: 282759
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)