Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0679
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = -2

Query: 158 YNTRSNI*NEMFNERFPRRATEQQSTSNIRTKSLKKTNNYPFTI 27
           Y +RS++ ++   +++P   TEQ ++ ++ +  ++  N+  F +
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAM 370


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = -2

Query: 158 YNTRSNI*NEMFNERFPRRATEQQSTSNIRTKSLKKTNNYPFTI 27
           Y +RS++ ++   +++P   TEQ ++ ++ +  ++  N+  F +
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAM 370


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 221
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 278 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 221
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 278 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 314


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 SFVKHFILYIGSC-VVKYSGTLERAWVREALTTVDMQ 221
           S+VK   +Y+G+C V+ ++  LE A V      + M+
Sbjct: 217 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR 253


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 258 FTIKLNNNFS*SFACRLSSAPRGPMLSLMFLNILQHTIQY 139
           F  +  NN   S     S++ R P   +++ NIL + ++Y
Sbjct: 395 FDFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRY 434


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 390
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 57  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 89


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 FLINLKFSYQIQDFLLEQSRKFDRTGIDSSDLN 390
           F+++++  Y+I   L    ++FD T   S DL+
Sbjct: 25  FILDVRLDYRISCLLSIFKQEFDETERASGDLS 57


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 344 TKRHGAFCFLSAFSP 388
           T RH A C+LS   P
Sbjct: 311 TTRHNATCYLSHVDP 325


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 344 TKRHGAFCFLSAFSP 388
           T RH A C+LS   P
Sbjct: 17  TTRHNATCYLSHVDP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,356
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)