Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0679
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    31   0.53 
At5g19730.1 68418.m02346 pectinesterase family protein contains ...    29   2.8  
At4g02920.2 68417.m00396 expressed protein                             28   5.0  
At4g02920.1 68417.m00395 expressed protein                             28   5.0  

>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -2

Query: 458 IQDFLLEQSRKFDRTGIDSSDLNAEKMRSKNKMLR 354
           ++ FLLE S++F     +SS+++A K R KNK  R
Sbjct: 180 LKSFLLEMSQQFAPDESESSEISALKKRKKNKSRR 214


>At5g19730.1 68418.m02346 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 383

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 523 IGDVNKVSI*VNKKYYLLESISFRNSSVVCRPG 621
           +G  N  S  VN  +++ ++I+FRN++ V  PG
Sbjct: 164 MGTYNSASFAVNSPFFVAKNITFRNTTPVPLPG 196


>At4g02920.2 68417.m00396 expressed protein
          Length = 419

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 536 LTSPIHYLFTKIFMRIFLINLKFSYQ--IQDFLLEQSRKFDRTGIDSSDLNA----EKMR 375
           L   +H    +  +  F I  KF+ Q  + +FLL QS +F   G D S LN     E M+
Sbjct: 82  LLMDVHETAPESLILSFGIADKFARQEKVMEFLLSQSEEFKEKGFDMSLLNELMEFESMK 141

Query: 374 SKNKM 360
           S +++
Sbjct: 142 SSSQL 146


>At4g02920.1 68417.m00395 expressed protein
          Length = 418

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 536 LTSPIHYLFTKIFMRIFLINLKFSYQ--IQDFLLEQSRKFDRTGIDSSDLNA----EKMR 375
           L   +H    +  +  F I  KF+ Q  + +FLL QS +F   G D S LN     E M+
Sbjct: 81  LLMDVHETAPESLILSFGIADKFARQEKVMEFLLSQSEEFKEKGFDMSLLNELMEFESMK 140

Query: 374 SKNKM 360
           S +++
Sbjct: 141 SSSQL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,008
Number of Sequences: 28952
Number of extensions: 253164
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)