Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0678
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   100   2e-22
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   3.2  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   5.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  100 bits (240), Expect = 2e-22
 Identities = 46/95 (48%), Positives = 59/95 (62%)
 Frame = +3

Query: 225 YNIINRSKLKTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKE 404
           + + +   L TSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K 
Sbjct: 214 FMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKP 272

Query: 405 TFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDT 509
            F                 +V +HH+FTVG+D+DT
Sbjct: 273 IFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDT 307



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 29/83 (34%), Positives = 38/83 (45%)
 Frame = +1

Query: 16  AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 195
           +H G ++DLAI SL L GISS                   S  Q+PLF  A+ IT+    
Sbjct: 144 SHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLL 203

Query: 196 XXXXXXAGAITILLTDRNLKHHF 264
                 AG + +L +DRNL   F
Sbjct: 204 LTLPVLAGGLFMLFSDRNLNTSF 226



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = +2

Query: 509 RAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 610
           RAYF++AT++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 308 RAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 374 YYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY 502
           YY T   KK +   F  +LCYT       Y      ++C Y Y
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHY 232


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 357 ILVKLKYKLQDVQKI-KINVDIKLGLLLQQDQKMMF*VSI 241
           + V   +++   Q + K+N+D+ LGL +Q+  K++F  S+
Sbjct: 560 LTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYKIIFPFSL 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,297
Number of Sequences: 5004
Number of extensions: 34632
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)