Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0678
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 371 SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 487
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 290 NFISTFILIFWTS*SLYFNFTRIWYNFSYYF 382
           N++ T+I+I WT   + +++   +YN S+ F
Sbjct: 111 NYVLTYIIINWTLPPVIYSYFFFFYNCSFPF 141


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 261 FFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 377
           F DP  G DP LY++    F +  V I  +  +G IS++
Sbjct: 194 FTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGYISYV 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,831
Number of Sequences: 27780
Number of extensions: 194733
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)