Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0677
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082)                   29   2.7  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   8.3  

>SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082)
          Length = 460

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 227 CRTFVQPV-TKRERDRESTHETDYPLHLWTRISCE 328
           C + V+P  T RE D    +ETD P ++ T + CE
Sbjct: 380 CTSIVRPTCTARETDMYFENETDMPFNMKTDMHCE 414


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 374  TKESRTETAFKLSSTVRTRSVSIDEADN 291
            TKE+  ET+ KLS T + RS  + E D+
Sbjct: 3164 TKENLEETSTKLSETEKLRSSEVSERDS 3191


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 131  ECESYFMTRCDESLRNDGIFYGLLVTYALDNLCRTFVQPVTKRERDRESTHET 289
            ECE  F +   ES  N+        T+A+ N      QPV   E  R +THE+
Sbjct: 1832 ECEEVFESEKTESFNNED-------TFAVTNTPEPLPQPVHITEETRITTHES 1877


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,447
Number of Sequences: 59808
Number of extensions: 299412
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)