Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0676
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.59 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   3.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.2  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   9.6  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 165 LCVCQLTFIKLHLVFCC 115
           L VC   F  +HL+FCC
Sbjct: 254 LLVCIYYFYYMHLLFCC 270



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 156 CQLTFIKLHLVFCCH*IF 103
           C      +HL+FCC  IF
Sbjct: 171 CAFIIFTMHLLFCCAFIF 188


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 285 DWSEINAAWGQTVLLLSSLARKINF 359
           +W ++  AW +  LL+ +L  + NF
Sbjct: 417 EWPQLMKAWLKIELLVGNLGMRRNF 441


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 649 FLRIELDLYGVRMWWR 602
           FLR+ L + GV++ WR
Sbjct: 766 FLRVILSVVGVKLRWR 781


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 457 KPPEPYNGKTFWSSKTSMYE*FPYG 383
           +P   YN   +WS   SMY  +P+G
Sbjct: 261 RPYPVYN--QWWSGPLSMYYQYPFG 283


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -1

Query: 544 THFHLLLELLQASKNATIAASNLVSQRNRKP---PEPYNGKTFWS--SKTSM 404
           T  +  ++LL A+ +   +  +    R R P   P PY G+  W+   KT M
Sbjct: 631 TQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGKTKM 682


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -1

Query: 544 THFHLLLELLQASKNATIAASNLVSQRNRKP---PEPYNGKTFWS--SKTSM 404
           T  +  ++LL A+ +   +  +    R R P   P PY G+  W+   KT M
Sbjct: 631 TQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGKTKM 682


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -1

Query: 544 THFHLLLELLQASKNATIAASNLVSQRNRKP---PEPYNGKTFWS--SKTSM 404
           T  +  ++LL A+ +   +  +    R R P   P PY G+  W+   KT M
Sbjct: 631 TQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGKTKM 682


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -1

Query: 544 THFHLLLELLQASKNATIAASNLVSQRNRKP---PEPYNGKTFWS--SKTSM 404
           T  +  ++LL A+ +   +  +    R R P   P PY G+  W+   KT M
Sbjct: 631 TQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGKTKM 682


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 563 PYRIDKGKIEDTASPPHAYS 622
           PY + + K    + PPH Y+
Sbjct: 267 PYPMQRPKSASLSPPPHVYN 286


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 174 GKIKKNECLQSYLPYIRLWSVWNH 245
           GKIK  +C Q     I     WNH
Sbjct: 197 GKIKTFKCKQCDFVAITKLEQWNH 220


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 552 PVLPISTCSLNC 517
           PV+ +STCS+ C
Sbjct: 75  PVVSLSTCSMLC 86


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 554 SPYYPFPLAP*TVAGI*KCYHC 489
           +P+Y FP        + KCY C
Sbjct: 28  TPWYDFPTNQKYYPSLAKCYAC 49


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 LSGLPRLLCMSDSHMVLICSAGN 361
           +S L  +L  + + MVL  SAGN
Sbjct: 1   MSKLLAILAFASAFMVLSASAGN 23


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 429 LSGLPRLLCMSDSHMVLICSAGN 361
           +S L  +L  + + MVL  SAGN
Sbjct: 1   MSKLLAILAFASAFMVLSASAGN 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,179
Number of Sequences: 336
Number of extensions: 4164
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)