Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0676
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    80   3e-16
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.5  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    27   2.6  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.9  
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.9  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.9  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   7.9  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.9  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    25   7.9  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   7.9  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
 Frame = +3

Query: 255 RLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLE----D 422
           RLGRLP+  V+W+EINAAWG TVLLL  L  K++F+   Y+L P+G+ S+I   +     
Sbjct: 303 RLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLDFHSSSYQLKPFGSQSFIIRFDRDPNG 362

Query: 423 QKVLP----LYGSGGFRFLWDTKFDAAMVAFLD 509
            +V P    L+ SG  +   + +FD  MVAFLD
Sbjct: 363 NQVKPTKLDLFSSGELKIFMNRRFDQGMVAFLD 395



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 64  EQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHIS 222
           E+  ++    +++   ++ E Q      +  +   +LEKL+K NVF   F+IS
Sbjct: 233 EEQEFYNNLNQFQIKKLSLERQYDCANLEFEHNSRKLEKLQKMNVFSDIFYIS 285


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = -2

Query: 531 CSLNCCRHLKMLPLPHRIWYP------RETGNHPNRIT 436
           CSL C      +P  +R+WYP       ETG  P+R T
Sbjct: 141 CSLVCLLAEIYVPPANRVWYPDDAAELEETGLRPSRFT 178


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 484 SNLVSQRNRKP-PEPYNGKTFWSSKTSMYE*FPYGTNL*RWKLKLIFLANEERSNTV*PH 308
           + L+S++ RKP P P +G  +      + + F  GT+L  +K KL+F  +   S++  P 
Sbjct: 99  NQLLSRKKRKPTPPPSDGLYYVFRGKRIKKSFRPGTDLSTFKPKLLFADSAPSSSSDNPT 158

Query: 307 AAL-ISDQS 284
           +++ ++D S
Sbjct: 159 SSVDLNDYS 167


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 103 KDLMTTEDQMKFYECQLAYTQSQLE 177
           +D  T+E   +FY  Q+AY+Q + E
Sbjct: 736 EDATTSEQVSEFYRSQVAYSQKEKE 760


>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 444 GSGGFR-FLWDTKFDAAMVAFLDACNSSR 527
           G+GGF  F    K+D A   FLDA N  R
Sbjct: 18  GTGGFALFGGGNKYDEASELFLDAANGYR 46


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 444 GSGGFRFLWDTKFDAAMVA 500
           GSG F+  WD  FD++++A
Sbjct: 259 GSGSFKPSWDGSFDSSLMA 277


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 616 RMWWRCCILDFAFVYSVRKTKARITHFHLLLELLQ 512
           R+W   C  + AF+   ++TK + +HF LL++L Q
Sbjct: 137 RLWKEHCGRERAFLRK-KRTKIQCSHFDLLVKLGQ 170


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 534 TCSLNCCRHLKMLPLPH 484
           +CS  C  H+K+L +PH
Sbjct: 261 SCSHQCDTHMKLLDIPH 277


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVF 201
           + +Y K    + ++ +F   ++A  QSQLEKL   N +
Sbjct: 448 FLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYY 485


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 58  DKEQDVYWREYTKYRKD---LMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKA 207
           D+ +D+Y   Y K R+D     + +D   F    L YTQ +L   ++   F A
Sbjct: 234 DQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNA 286


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 486 HRIWYPRETGNHPNR-ITVRLSGLPRLLCMSDS 391
           +++ + +E  N PN  +TVR SG   LL +SDS
Sbjct: 786 NKVSHHKEVLNDPNSYLTVRKSGTYTLLSVSDS 818


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 220 SDSGQFGIINNFA*VACLLHRLIGRRLMRHGVKLY 324
           S SGQ+ I  N   +ACL+H    RR   +   +Y
Sbjct: 150 SPSGQYVIRKNIEKLACLVHNEAMRRCSSYTSAIY 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,252
Number of Sequences: 5004
Number of extensions: 67999
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)