Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0676
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 68 8e-12
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 52 4e-07
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 51 8e-07
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 30 1.5
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 30 2.0
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 30 2.0
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 3.5
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 29 3.5
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 4.6
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646 29 4.6
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 29 4.6
06_01_1059 + 8512335-8513444 28 8.1
06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980 28 8.1
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 8.1
02_01_0705 - 5259949-5263887,5266207-5266509 28 8.1
01_05_0148 + 18609853-18610058,18610347-18612669 28 8.1
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 67.7 bits (158), Expect = 8e-12
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +3
Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ-RYKLVPYGNHSYIEVLED-- 422
FRLGRLP V+W EINAAWGQ LLL ++A+ F+ R K+ P G+++ + +
Sbjct: 388 FRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFTPKFEYRIKIHPMGSYARVTDIHKNT 447
Query: 423 -QKVLPLYGSGGFRFLWDTKFDAAMVAFL 506
+ + L G W T+FD AM FL
Sbjct: 448 YELYIMLTRFGPVDLFWSTRFDKAMTWFL 476
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +1
Query: 67 QDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGII 246
++ YW E+ ++ L + +++ + ++ +Q LE LK+ NV F+IS G G I
Sbjct: 326 EERYWHEFNSFQFQLTSHQEEREAILAKIEVSQVHLELLKRRNVLNDAFYISHDGVIGTI 385
Query: 247 NNF 255
NNF
Sbjct: 386 NNF 388
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3
Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ 368
FRLGRLP V+W EINAAWGQ LLL ++A+ F+
Sbjct: 328 FRLGRLPNVQVEWDEINAAWGQAALLLHTMAQYFTPKFE 366
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 67 QDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGII 246
++ YW E+ ++ L + +++ ++ +Q LE LK+TNV F+IS G G I
Sbjct: 266 EERYWHEFNSFQFQLTSHQEERDAILAKIEVSQVHLELLKQTNVLNDAFYISHDGVIGTI 325
Query: 247 NNF 255
NNF
Sbjct: 326 NNF 328
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLAR 347
FRLGRLP V+W EINAAWGQ LLL ++A+
Sbjct: 330 FRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ 361
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 67 QDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGII 246
++ Y + ++ ++ +++ ++ +Q LE LK+TNV F+IS G G I
Sbjct: 268 EERYCHDLNSFQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFYISHDGVIGTI 327
Query: 247 NNF 255
NNF
Sbjct: 328 NNF 330
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 568 VRKTKARITHFHLLLELLQASKNATIAASNLVSQRNRKPPEP 443
V + K +++H+ LL+ A K A L R+RKPP P
Sbjct: 73 VERCKLKLSHYQSLLDT--AEKKLAEAQDRLARYRDRKPPPP 112
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 237 WNH**FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVL 416
W+H FRL R+ P+ W E AA+ +T + + ++ + ++ + G+ S E L
Sbjct: 335 WDH--FRLNRITAEPITWLEFTAAFRKTHI----PSGVVSLKKKEFRSLTQGSRSVTEYL 388
Query: 417 EDQKVLPLY 443
+ L Y
Sbjct: 389 HEFNRLARY 397
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 237 WNH**FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVL 416
W+H FRL R+ P+ W E AA+ +T + + ++ + ++ + G+ S E L
Sbjct: 114 WDH--FRLNRITAEPITWLEFTAAFQKTHI----PSGVVSLKKKEFRSLTQGSRSVTEYL 167
Query: 417 EDQKVLPLY 443
+ L Y
Sbjct: 168 HEFNRLARY 176
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 312 GQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLEDQ 425
G VL+ +L NFNF+ ++L+ + S I LED+
Sbjct: 469 GGPVLVQLALGTLANFNFKGHELLEFARESVILYLEDE 506
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 363 FQRYKLVPYGNHSYIEVLEDQKVLPLYGSGGFRF 464
+ RYK +P+GN +Y + ED ++ +RF
Sbjct: 95 YHRYKRLPHGNRAYRQGTEDVNLMKSLNFDAYRF 128
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 237 WNH**FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVL 416
W+H FRL R P+ W E AA+ +T + + ++ + ++ + G+ S E L
Sbjct: 313 WDH--FRLNRTTAEPITWLEFTAAFRKTHI----PSGVVSLKKKEFRSLTQGSRSVTEYL 366
Query: 417 EDQKVLPLY 443
+ L Y
Sbjct: 367 HEFNRLARY 375
>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
Length = 429
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 237 WNH**FRLGRLPTAPVDWSEINAAWGQT 320
W+H FRL R P+ W E AA+ +T
Sbjct: 298 WDH--FRLNRTTAEPISWLEFTAAFRKT 323
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 91 CTPSNTHPVLYLASLSPSPESLFPHSLPR 5
CTP + PVL L + +P P+ PH+ PR
Sbjct: 64 CTPESDPPVLALRAHTPDPD---PHTSPR 89
>06_01_1059 + 8512335-8513444
Length = 369
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 237 WNH**FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVL 416
W+H FR+ R P+ W+E A+ +T + + +A K + ++ + +H+ E L
Sbjct: 113 WDH--FRMNRADGQPITWAEFTEAFKKTHIPVGVVALK----KREFRALKQKDHTVAEYL 166
Query: 417 EDQKVLPLY 443
+ L Y
Sbjct: 167 HEFNRLARY 175
>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
Length = 208
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 207 YLPYIRLWSVWNH**FRLGRLPTAPVDWSEINAAWGQTVLL 329
YL R WN L RLP+ W + + +G VLL
Sbjct: 66 YLAAYRAEGSWNVERLNLNRLPSLTFSWYALGSRYGDDVLL 106
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 489 PHRIWYPRETGNHPNRITVRLSGLP 415
PH W+P E G +PN + +G P
Sbjct: 578 PHGNWFPVEDGMNPNNLNRGSAGFP 602
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 70 PVLYLASLSPSPESLFPHSLPRA 2
P+L +AS SPSP + PH+ RA
Sbjct: 3 PMLSIASRSPSPALIAPHASARA 25
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 106 LSYISCTPSNTHPVLYLASLSPSPESL 26
LSY+S T S+ VL L L+P P SL
Sbjct: 648 LSYLSITASDEDDVLQLDGLNPLPPSL 674
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,383
Number of Sequences: 37544
Number of extensions: 436807
Number of successful extensions: 1081
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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