Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0676
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)              77   1e-14
SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         31   1.2  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28730| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)                    29   4.7  
SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            28   6.2  
SB_25023| Best HMM Match : SET (HMM E-Value=2.1e-07)                   28   6.2  

>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
          Length = 587

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 32/67 (47%), Positives = 49/67 (73%)
 Frame = +1

Query: 55  LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQ 234
           L++ +  Y+ EY +Y+++L+  ED+ +  + Q+ Y Q+QL+KLKKTNVF +TFHI  +G 
Sbjct: 218 LEEAEKAYYTEYCEYQRELLDFEDEKQSVDNQMMYAQAQLDKLKKTNVFNSTFHIWHNGH 277

Query: 235 FGIINNF 255
           FG INNF
Sbjct: 278 FGTINNF 284


>SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 611 VVEMLYPRFCLC---LFCTEDKSPYYPFPLAP 525
           VV+ + P  C+C   LF  E KSP  P+P+AP
Sbjct: 13  VVKFVAPYRCVCEPILFALEVKSPASPYPVAP 44


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/73 (17%), Positives = 35/73 (47%)
 Frame = +1

Query: 1    RHEAMNXXXXXXXXXXXXLDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEK 180
            R+E M             ++K  +VY  E  +   D+ + + Q+  YE ++A+ + +++ 
Sbjct: 1495 RYELMMAKSDSERVVGVEVEKRVEVYRSEVVEKETDIQSLKSQLYKYESEVAFLKQEVDA 1554

Query: 181  LKKTNVFKATFHI 219
            +++ N +  +  +
Sbjct: 1555 VQQRNEYNLSIQL 1567


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 184 LIFPTVTVCMPADIHKTSFGLLLSLNLS-YISCTPSNTHPVLYLASLSPSPESLFPHSL 11
           +I+PT        I+ T+    L++NLS Y+   PS T P++Y  +L  +   ++P +L
Sbjct: 231 IIYPTALPITSPTIYHTA----LTINLSNYLPTAPSITSPIIYPTALPITSPIMYPTAL 285


>SB_28730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 112 LNLSYISCTPSNTHPVLYLASLSPSPESLF 23
           +NL +ISCTP +  P   + +L+P  +SLF
Sbjct: 8   VNLPFISCTPVHPPPNAIVLTLTPLKKSLF 37


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 55  LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEK 180
           L++E+D   R+  K  KD +T +D+++    +   T+ QLE+
Sbjct: 818 LERERDSLKRDKDKLHKDYITIDDELQNVRSRYTRTKKQLEE 859


>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 462 FLWDTKFDAAMVAFLDACNSSRSKWKW 542
           FLW+ KF       L  C+   S W+W
Sbjct: 295 FLWEVKFHPQKADHLFTCSEDGSVWQW 321


>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
          Length = 711

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 462 FLWDTKFDAAMVAFLDACNSSRSKWKW 542
           FLW+ KF       L  C+   S W+W
Sbjct: 119 FLWEVKFHPQKADHLFTCSEDGSVWQW 145


>SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 55  LDKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKAT 210
           L KE+    +E  KYRK    T+   +    +L+   +++EK+K  N   A+
Sbjct: 279 LSKEKSNLEKEANKYRKQREETQKTCEELASKLSKAYAEIEKMKSENTEAAS 330


>SB_51196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 580 FVYSVRKTKARITHFHLLLELLQASKNATIAASNLVSQRNRKPPEPYNGK 431
           F  S+   ++    FH   ELL   K +T +   L+ +R++KP +  NGK
Sbjct: 30  FQLSLPNYESSTKDFHSSTELL---KESTTSLEQLLGKRHKKPSQGINGK 76


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -1

Query: 598 CILDFAFVYSVRKTKARITHFHLL---LELLQASKNATIA 488
           C+L+ ++  + RKTK  +THF LL   LE L   +N+T+A
Sbjct: 56  CLLE-SYGNTERKTKELLTHFDLLEKELEQLLDIRNSTVA 94


>SB_25023| Best HMM Match : SET (HMM E-Value=2.1e-07)
          Length = 181

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 381 VPYGNHSYIEVLEDQKVLP--LYGSGGFRFLWDTKFDAAMVAFLDACNSSRSKWKWVIRA 554
           +P G  ++I   E +++ P  +       ++W+   +  +V +LDA + + S W   IR 
Sbjct: 64  IPVG--TWIGPYEGRRIKPEEVTSDSDTTYMWEIFQEGKLVCYLDARDENTSSWMRFIRC 121

Query: 555 FVFRTE 572
             +R E
Sbjct: 122 ARYRDE 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,387,613
Number of Sequences: 59808
Number of extensions: 496265
Number of successful extensions: 1555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)