Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0676
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human a... 57 1e-08
Z80219-7|CAN86594.1| 804|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80219-6|CAI70409.1| 734|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80219-5|CAB02302.2| 784|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80219-4|CAE17938.1| 745|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80219-1|CAB02301.2| 727|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75546-12|CAN86896.1| 804|Caenorhabditis elegans Hypothetical p... 29 3.2
Z75546-11|CAI70402.1| 734|Caenorhabditis elegans Hypothetical p... 29 3.2
Z75546-10|CAA99896.2| 784|Caenorhabditis elegans Hypothetical p... 29 3.2
Z75546-9|CAE17895.1| 745|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical p... 29 3.2
AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical ... 29 3.2
AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical ... 29 4.2
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 27 9.6
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 9.6
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 9.6
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 9.6
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 9.6
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 9.6
>U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human
autophagy) homologprotein 1 protein.
Length = 375
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQRYKLVPYGNHSYIEVLE---D 422
FRLG L APV+++EINAA GQ VLLL L +I V G+HSYI++ D
Sbjct: 217 FRLGYLKDAPVEFTEINAALGQIVLLLEILLERIGVQHHELMPVAMGSHSYIKLRRNGID 276
Query: 423 QKVLPLYGSG 452
+ LYG G
Sbjct: 277 METYALYGQG 286
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 79 WREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGIINNF 255
W++Y + + +D++ E + Y + Q KL TNV FHI G G IN F
Sbjct: 159 WKKYRDNLRQVFEDQDELHSLEAERQYAEVQHRKLTDTNVLDLCFHIWVDGIVGEINGF 217
>Z80219-7|CAN86594.1| 804|Caenorhabditis elegans Hypothetical
protein T01H8.1e protein.
Length = 804
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 186 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 217
>Z80219-6|CAI70409.1| 734|Caenorhabditis elegans Hypothetical
protein T01H8.1d protein.
Length = 734
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 173 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 204
>Z80219-5|CAB02302.2| 784|Caenorhabditis elegans Hypothetical
protein T01H8.1a protein.
Length = 784
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 192 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 223
>Z80219-4|CAE17938.1| 745|Caenorhabditis elegans Hypothetical
protein T01H8.1c protein.
Length = 745
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 153 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 184
>Z80219-1|CAB02301.2| 727|Caenorhabditis elegans Hypothetical
protein T01H8.1b protein.
Length = 727
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 135 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 166
>Z75546-12|CAN86896.1| 804|Caenorhabditis elegans Hypothetical
protein T01H8.1e protein.
Length = 804
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 186 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 217
>Z75546-11|CAI70402.1| 734|Caenorhabditis elegans Hypothetical
protein T01H8.1d protein.
Length = 734
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 173 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 204
>Z75546-10|CAA99896.2| 784|Caenorhabditis elegans Hypothetical
protein T01H8.1a protein.
Length = 784
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 192 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 223
>Z75546-9|CAE17895.1| 745|Caenorhabditis elegans Hypothetical
protein T01H8.1c protein.
Length = 745
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 YTKYRKDLMTTEDQMKFYECQLAYTQSQLEKL 183
+T+ K++M TED +KFY +L L L
Sbjct: 153 FTRLSKEVMFTEDDVKFYLAELTLALEHLHSL 184
>Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 309 WGQTVLLLSSLARKINFNFQRYKLV--PYGNHSYIEVLE--DQKVLPLYGSGGFRFLWDT 476
WGQ ++ + L +I FQ Y+LV Y IE++E +K LP Y F+ + D
Sbjct: 274 WGQKKVVEAGLEGRIELKFQDYRLVKEKYTRVVSIEMIEAVGEKYLPQY----FQIINDV 329
Query: 477 KFDAAMVA 500
D + A
Sbjct: 330 LTDGGIAA 337
>AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 309 WGQTVLLLSSLARKINFNFQRYKLV--PYGNHSYIEVLE--DQKVLPLYGSGGFRFLWDT 476
WGQ ++ + L +I FQ Y+LV Y IE++E +K LP Y F+ + D
Sbjct: 274 WGQKKVVEAGLEGRIELKFQDYRLVKEKYTRVVSIEMIEAVGEKYLPQY----FQIINDV 329
Query: 477 KFDAAMVA 500
D + A
Sbjct: 330 LTDGGIAA 337
>AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical
protein Y4C6B.1 protein.
Length = 442
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 58 DKEQDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNV 198
D ++D T+ +TTEDQM + QLA QL L+K+ V
Sbjct: 203 DDDEDRLSMPSTRTGVTALTTEDQMAAIQNQLAMLSKQLMCLQKSGV 249
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 297 INAAWGQTVLLLSSLARKINFNFQRYKLVPY--GNHSYIEVLEDQKVLPLYGSGGF 458
IN W ++ ++ + K ++N++ Y P+ G + V+ +YG+G F
Sbjct: 654 INMRWARSDIIYNYFWGKWDYNYETYSTRPFSRGLPHVLSVVRGSNYYDVYGNGQF 709
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 VSLGYQIRCGNGSIFRCLQQFKEQVEMGNTGFCLPY 568
+++G Q GS+F + + E V M +TGF PY
Sbjct: 818 INVGLQYNIQQGSLFININRCVELVGMDSTGFSDPY 853
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein 1,
isoform b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 VSLGYQIRCGNGSIFRCLQQFKEQVEMGNTGFCLPY 568
+++G Q GS+F + + E V M +TGF PY
Sbjct: 893 INVGLQYNIQQGSLFININRCVELVGMDSTGFSDPY 928
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 VSLGYQIRCGNGSIFRCLQQFKEQVEMGNTGFCLPY 568
+++G Q GS+F + + E V M +TGF PY
Sbjct: 827 INVGLQYNIQQGSLFININRCVELVGMDSTGFSDPY 862
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein 1,
isoform d protein.
Length = 1106
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 VSLGYQIRCGNGSIFRCLQQFKEQVEMGNTGFCLPY 568
+++G Q GS+F + + E V M +TGF PY
Sbjct: 971 INVGLQYNIQQGSLFININRCVELVGMDSTGFSDPY 1006
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 VSLGYQIRCGNGSIFRCLQQFKEQVEMGNTGFCLPY 568
+++G Q GS+F + + E V M +TGF PY
Sbjct: 818 INVGLQYNIQQGSLFININRCVELVGMDSTGFSDPY 853
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,880
Number of Sequences: 27780
Number of extensions: 374887
Number of successful extensions: 979
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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