Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0676
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    66   3e-11
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    51   6e-07
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    29   2.9  
At5g37540.1 68418.m04521 aspartyl protease family protein weak s...    28   6.8  
At5g08070.1 68418.m00941 TCP family transcription factor, putati...    27   8.9  
At4g13430.1 68417.m02096 aconitase family protein / aconitate hy...    27   8.9  

>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +3

Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ-RYKLVPYGNHSYIEVLEDQK 428
           FRLGRLP   V+W EINAAWGQ  LLL ++       FQ + K+ P G++  I V  + +
Sbjct: 325 FRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQCQVKIQPMGSYPRI-VDSNNE 383

Query: 429 VLPLYGSGGFRFLWDTKFDAAMVAFL 506
              L+G       W T++D AM  +L
Sbjct: 384 TYELFGP--VNLFWSTRYDKAMTLYL 407



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = +1

Query: 67  QDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGII 246
           +D YW+E+  ++  L+  +++      ++  +Q+ LE L KTNV    F I + G+FG I
Sbjct: 263 EDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTI 322

Query: 247 NNF 255
           NNF
Sbjct: 323 NNF 325


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = +1

Query: 67  QDVYWREYTKYRKDLMTTEDQMKFYECQLAYTQSQLEKLKKTNVFKATFHISDSGQFGII 246
           +D YW+E+  ++  L+  +++      ++  +Q+ LE L KTNV    F I + G+FG I
Sbjct: 263 EDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDGEFGTI 322

Query: 247 NNF 255
           NNF
Sbjct: 323 NNF 325



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 25/39 (64%)
 Frame = +3

Query: 252 FRLGRLPTAPVDWSEINAAWGQTVLLLSSLARKINFNFQ 368
           FRLGRLP   V+W EINAAWGQ  LLL ++       FQ
Sbjct: 325 FRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQ 363


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 133 SFGLLLSLNLSYISCTPSNTHPVLYLASLSPSPESLFPHSLP 8
           S  +LL +  S  S +PS++ P     SLSPSP S  P S P
Sbjct: 13  SIAILLFITTSSSSLSPSSSSP-----SLSPSPPSSSPSSAP 49


>At5g37540.1 68418.m04521 aspartyl protease family protein weak
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Prosite
           PS00141: Eukaryotic and viral aspartyl proteases active
           site; contains 1 predicted transmembrane domain
          Length = 442

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -1

Query: 586 FAFVYSVRKT--KARITHFHLLLELLQASKNATIAASNLVSQRNRKPP-EPYNGKTFWSS 416
           F F YSV  +   +   HF L    L  + N++   ++L+S+RN  PP  PY  ++    
Sbjct: 17  FFFCYSVSLSWSSSLSLHFPLTSLRLTPTTNSSSFKTSLLSRRNPSPPSSPYTFRSNIKY 76

Query: 415 KTSMYE*FPYGT 380
             ++    P GT
Sbjct: 77  SMALILSLPIGT 88


>At5g08070.1 68418.m00941 TCP family transcription factor, putative
           similar to TFPD (GI:6681577) [Arabidopsis thaliana] ;
           putative basic helix-loop-helix DNA binding protein TCP2
           - Arabidopsis thaliana, EMBL:AF072691
          Length = 242

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 535 HLLLELLQASKNATIAASNLVSQRNRKPP 449
           HL   LL  S N T+A SN  +  N  PP
Sbjct: 178 HLQQSLLDQSGNVTVAFSNNYNNNNLNPP 206


>At4g13430.1 68417.m02096 aconitase family protein / aconitate
           hydratase family protein contains Pfam profile PF00330:
           Aconitase family (aconitate hydratase
          Length = 509

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 542 GNTGFCLPYRIDKGKIEDTASPPHA 616
           GN  F   YR D  K+E   + PH+
Sbjct: 329 GNASFVADYRFDVSKLEPVVAKPHS 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,014
Number of Sequences: 28952
Number of extensions: 358541
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)