Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0675
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CFF94 Cluster: hypothetical protein TTHERM_0072...    34   3.7  
UniRef50_A5K1E2 Cluster: Putative uncharacterized protein; n=2; ...    34   3.7  
UniRef50_Q9XMS0 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   4.9  
UniRef50_A7SE38 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.9  
UniRef50_O96216 Cluster: Putative uncharacterized protein PFB061...    33   6.5  
UniRef50_Q240L1 Cluster: Hypothetical repeat containing protein;...    33   8.6  
UniRef50_Q22TM0 Cluster: Putative uncharacterized protein; n=17;...    33   8.6  

>UniRef50_UPI00006CFF94 Cluster: hypothetical protein
           TTHERM_00723220; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00723220 - Tetrahymena
           thermophila SB210
          Length = 1466

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 51  CFLIEYVNHRFNFNMKMTQF-SFSMHI*MKTKIFLSK*KYLNV 176
           CF +EY+ H FN + K+ +F  F+M + + T + LS   Y N+
Sbjct: 96  CFTLEYIEHLFNSSNKLQEFQKFTMMLDLTTIVILSHDLYGNL 138


>UniRef50_A5K1E2 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 6648

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 614  VFPKQIYIKLSRNIEALYVCHNIILHIIFFTKLNMCNTLMCILIQNNSR 468
            ++   IY KL+R ++ LY C + +  + F T +N C  L      NN R
Sbjct: 2356 IYIYNIYFKLNRFVKKLYYCSD-VRKVFFSTSINRCKNLFYNFENNNVR 2403


>UniRef50_Q9XMS0 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=5; Tetrahymena|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Tetrahymena pyriformis
          Length = 755

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 641 YNIGFNTDI-VFPKQIYIKLSRNIEALYVCHNIILHIIFF 525
           +N  FN DI VF  QIY+  + NIE  Y   N+I  I FF
Sbjct: 363 FNTTFNLDILVFNNQIYLYENYNIEFFYFSINLIEFISFF 402


>UniRef50_A7SE38 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 167

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -1

Query: 514 ICATH*CVSLFKTILDKEPISLH*TFFCKNRYCSCLCSTFILVSKLSNLHE--K**RCKL 341
           +C+ + C ++F   L     S+   + C N +   LCS    +   SN+       +C  
Sbjct: 19  MCSIYLCSNVFSIYLCSNVFSI---YLCSNVFSIYLCSNVFSIYLCSNVFSIYLVFKCVS 75

Query: 340 ENVLQA*F*IRICSNSLMYICILM 269
             +    F I +CSN L+YIC+ M
Sbjct: 76  IYLCSNVFSIYLCSNVLVYICVQM 99


>UniRef50_O96216 Cluster: Putative uncharacterized protein PFB0615c;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFB0615c - Plasmodium falciparum
            (isolate 3D7)
          Length = 2385

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -3

Query: 293  LDVHLHIN-EIMNYLF-DINFFFTIILLMSKLYSENNNLYIHI*IFLL*KKYF 141
            L+++ HIN   M YL  DI +++ +I+  +  Y  NNN+Y    +FL+ KK F
Sbjct: 1268 LEINPHINIRYMPYLNNDIQYYYPLIIKGNNNYENNNNMYD---LFLIKKKNF 1317


>UniRef50_Q240L1 Cluster: Hypothetical repeat containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Hypothetical
           repeat containing protein - Tetrahymena thermophila
           SB210
          Length = 2310

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 644 NYNIGFNTDIVFPKQI--YIKLSRNIEALYVCHNIILHIIFFTKLNMCNTLMCILIQNNS 471
           NY +  N D +  + I   IKL+ N+ A+     +I++ I  T  N  N  + IL Q+N+
Sbjct: 220 NYQV-LNADPIIIQNIGKQIKLNNNLIAIQSPSQLIIYKIIITNSNSFNQSLIILFQSNN 278

Query: 470 RQ 465
           +Q
Sbjct: 279 QQ 280


>UniRef50_Q22TM0 Cluster: Putative uncharacterized protein; n=17;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1283

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 335  CF-AGIILNSNMFK*LDVHLHINEIMNYLFDINFFFTIILLM 213
            CF   I  + N FK ++  L +  I N+LFD+ FFFTI  L+
Sbjct: 1184 CFRCDIFKSKNRFKIINFFLDLF-IQNFLFDLFFFFTIFFLL 1224


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,318,199
Number of Sequences: 1657284
Number of extensions: 11793423
Number of successful extensions: 24791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24775
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)