Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0675
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.16 
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   7.8  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 629 FNTDIVFPKQIYIKLSRNIEALYVCHNIILHIIFF---TKLNMCNTLMCILIQNNSRQR 462
           F  DIVF    +  LS+ + A      IILH IF       + C T +C+ + +NS  R
Sbjct: 141 FAGDIVFFFSHHPSLSKQVFAQLSIDGIILHTIFVPPKRSSSSCVTYVCLFLDSNSNPR 199


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 399 HLY*LVNYQIFMKNNNDVNWKMFCRHNFKFE 307
           HL   V Y +  +   D++W    R N KFE
Sbjct: 129 HLLSFVPYPMTAETLGDISWSFSRRENMKFE 159


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 229 VKKKLISKR*FIISLICKCTSSYLNIFEFKIMPAKHFPVYIVII 360
           V K ++     + SL CK ++S L++ +FK      F V++ I+
Sbjct: 42  VSKGVVLLSNIVPSLACKLSASILHVHKFKFAKRIGFCVFMSIL 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,539
Number of Sequences: 5004
Number of extensions: 57525
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)