Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0675
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)                 28   8.1  
SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)                     28   8.1  

>SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 653 FSKNYNIGFNTDIVFPKQIYIKLSRNIEALYVCHNIILHIIFFTKLNMCNTLMCILIQN 477
           FS NY +GF+ + +FP  +     RN++ + V   I  ++      +MC TL  + ++N
Sbjct: 481 FSGNYTLGFDDNPIFPPSL-----RNLQNMKVTAKI--YMTLNEVRHMCKTLAMLELEN 532


>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 638 NIGFNTDIVFPKQIYIKLSRNIEALYVCHNIILHIIFFTKLNMCNTLMCILIQ 480
           N+GF +DI  P+ + + L    + +      +  IIF    N C T M  ++Q
Sbjct: 131 NLGFGSDIGSPESVTVALRDLFKTMDKTSEAVPPIIFLQDANECWTQMVRVLQ 183


>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 565 NASMFLLNFI*ICLGKTISVLKPML*FLENYCCIRF 672
           N S+F+  ++ +C+G   SV+  ++  LE Y  +++
Sbjct: 177 NCSLFVTYYVVLCIGACCSVISLVMLSLERYIALQY 212


>SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 603 TNLYKIK*KHRGIICLSQHNTSYYIFYKTKYVQHTNVYPY 484
           T +YK +   R I+  +QH+T+  ++YK ++     +Y Y
Sbjct: 208 TTVYKAQRNTRTIVYKAQHSTTTVVYYKAQH-NRIPIYAY 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,737
Number of Sequences: 59808
Number of extensions: 357579
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)