Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0675
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 119 NAYLNENQNISFKVKIS 169
           NAYL +NQ I+  +K+S
Sbjct: 235 NAYLIKNQTITCPIKVS 251


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 119 NAYLNENQNISFKVKIS 169
           NAYL +NQ I+  +K+S
Sbjct: 235 NAYLIKNQTITCPIKVS 251


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 119 NAYLNENQNISFKVKIS 169
           NAYL +NQ I+  +K+S
Sbjct: 286 NAYLIKNQTITCPIKVS 302


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 119 NAYLNENQNISFKVKIS 169
           NAYL +NQ I+  +K+S
Sbjct: 235 NAYLIKNQTITCPIKVS 251


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 437 KGLMQTYWL 463
           KG+M+TYWL
Sbjct: 587 KGIMKTYWL 595


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 400 YYTDSYNNDFYKKRFNANLL 459
           Y  ++YNN+ Y K+   N++
Sbjct: 98  YNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 400 YYTDSYNNDFYKKRFNANLL 459
           Y  ++YNN+ Y K+   N++
Sbjct: 98  YNNNNYNNNNYNKKLYYNII 117


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 302 TYSNLKLCLQNIFQFTSL 355
           TY++L++ ++N  +FT L
Sbjct: 581 TYTSLQMAMKNPIEFTDL 598


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 95  ENDTVLIFNAYLNENQN 145
           E+DTVL+ N   +EN++
Sbjct: 180 EHDTVLVVNIEKSENES 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,545
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)