Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0674
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9DKU0 Cluster: U40; n=1; Elephantid herpesvirus 1|Rep:...    33   8.8  
UniRef50_Q8LGN0 Cluster: Glutamate receptor 2.7 precursor; n=32;...    33   8.8  

>UniRef50_Q9DKU0 Cluster: U40; n=1; Elephantid herpesvirus 1|Rep:
           U40 - Elephantid herpesvirus 1
          Length = 692

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 93  HFFISFQLVCYLSIHKTHQNFVELFVKLSKCCKE---KKQINNKEKLRFV*IYFSNNHYR 263
           HF++  + +C   IHK HQ +      + +C      K    NK+ L      F N   R
Sbjct: 82  HFYVINKALCSFEIHKDHQQYYRTLFDVDQCSLHDPIKISFVNKQDLEITLTDF-NEIER 140

Query: 264 FVCTL 278
           F+C L
Sbjct: 141 FLCKL 145


>UniRef50_Q8LGN0 Cluster: Glutamate receptor 2.7 precursor; n=32;
           Magnoliophyta|Rep: Glutamate receptor 2.7 precursor -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 952

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 247 EKYIYTKRNFSLLLICFFSLQHFESFTNNSTKFWCVLCIDK*QTN*KDMKKW 92
           EK +     F +L+ CF  L   +S+T N T F+ V  +    TN KD+ K+
Sbjct: 636 EKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKF 687


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,479,918
Number of Sequences: 1657284
Number of extensions: 11732676
Number of successful extensions: 23197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23191
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)