Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0674
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.1  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    27   1.9  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   7.8  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -2

Query: 367  VKIYYNNIEGTAHIQS*QPVMFNVYRASTNKVQTNR**L---LEKYIYTKRNFSLLLICF 197
            V IY   +E +A I   + ++ N+ +AS    Q  R       + Y+YT R+ +  LI F
Sbjct: 2670 VTIYNALLEKSALINQYKTIILNIVKASVKFYQVLRENFKSSTQGYVYTPRDLTRWLISF 2729

Query: 196  FSLQHFESFTNNST--KFW 146
             +     + TNN +  K W
Sbjct: 2730 KNYAESYAETNNLSLIKVW 2748


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 286 LHDTH*TSLVVTTEYEQSLRCCYNRFSLYMYVFD 387
           +H+T    L V + YEQS  CC N  S ++   D
Sbjct: 259 IHETGNNELPVASAYEQSKACC-NELSTFLSQID 291


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 195 FLCNILKVSRITPQSFGV 142
           FLC ILK + +TPQ++ +
Sbjct: 48  FLCKILKPTNLTPQTYSL 65


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 382 IHTYTVKIYYNNIEGTAHIQS*QPVMFNVYRA-STNKVQTNR**LLEKYIYTKRNF 218
           I  Y   + + N+   + +Q+    + ++ RA  T         +LE+Y+Y+K+N+
Sbjct: 250 IGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNY 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,695
Number of Sequences: 5004
Number of extensions: 56731
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)