Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0674
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    27   9.7  

>U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical
           protein T13C2.2 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 83  SQSPLLHIFSVSLLLIYTQD-TPKLCGVIRETFKMLQRKKTN**QRKI 223
           +++P+  +   S+ L+  +  TPK+   IRET++ +Q+KK     RK+
Sbjct: 68  NKAPIQKMAETSVFLLEKRTITPKVMHQIRETYEKIQKKKEGELSRKM 115


>Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.4 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 220 FSLLLICFFSLQHFESFTNNSTKFWC 143
           FS+LLI FFSL    S     T++WC
Sbjct: 6   FSILLISFFSLL---SVVTTKTQYWC 28


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 117 VCYLSIHKTHQNFVELFVKLSKCCKEKKQI 206
           +C + +HK ++N + + +K  KC + +  I
Sbjct: 307 ICLICVHKPYRNAIAIKIKSLKCARARNVI 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,548
Number of Sequences: 27780
Number of extensions: 311898
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)