Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0674
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 110 KRYEEVGFDSTAYTFLFLRIRKDPTLNK 27
           +R EEV  D T  T   LR++K+  L +
Sbjct: 339 ERTEEVALDRTPVTQGLLRVKKEEELQE 366


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 108 FQLVCYLSIHKTHQNFVELFVKLSKCCKEK 197
           F  + Y  ++K H  + +L  +    CKE+
Sbjct: 68  FSCIGYYKLNKIHDAYKDLNQRYGALCKEE 97


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 520 ILSXKVILMTNI*EEKIVSYILFSFVM 440
           +L  K++  T++    I  Y+LF+F+M
Sbjct: 280 LLVSKILPPTSLVLPLIAKYLLFTFIM 306


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 156 VELFVKLSKCCKEKKQINNKEKLR 227
           V   +K ++C K   Q NN+ K +
Sbjct: 408 VNNLIKNTRCAKSNNQNNNQNKYK 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,046
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)