Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0673
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    38   0.26 
UniRef50_UPI00015971F6 Cluster: YxeQ; n=1; Bacillus amyloliquefa...    32   10.0 

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 37.5 bits (83), Expect = 0.26
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 1    GRQRIRSAPGIAEVHGRR 54
            GRQR+ SAPGIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_UPI00015971F6 Cluster: YxeQ; n=1; Bacillus
           amyloliquefaciens FZB42|Rep: YxeQ - Bacillus
           amyloliquefaciens FZB42
          Length = 448

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 107 FFSLYAD-ERTTYLIVSGYRRPWTSAIPG 24
           FF LY D ER   L+V+G+ +PW    PG
Sbjct: 236 FFGLYGDLERAETLLVNGWGKPWRIVSPG 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,240,174
Number of Sequences: 1657284
Number of extensions: 10885092
Number of successful extensions: 20025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20023
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)