Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0673
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    28   1.3  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    26   3.9  

>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 492 TKKLNINRIRSKFCKLREPCALFVSHSFY 578
           TK L+I R++ K+  +RE C L  SH+ +
Sbjct: 103 TKVLSIPRLKLKYKTIREKCELRDSHNLF 131


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 376 HSWNSLLAEQQMGKEKMRSSLQG*HRQXTNK 468
           HS+++   +Q + KEK +  LQG   +  NK
Sbjct: 197 HSYSATFKKQDVYKEKQKKRLQGAEAESKNK 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,967
Number of Sequences: 5004
Number of extensions: 47829
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)