Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0673
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   30   1.8  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.1  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      28   7.2  

>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 244 KSNALLKLPPDRNRDPLSRSRSARNSMHSSMG 149
           +S ALL L P R+R+P+ R+ S  N++  S G
Sbjct: 453 ESGALLNLTPARSRNPVQRNESYCNAVSRSPG 484


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 502  NFFVK*KLCLFVCLXFGDANLGAKTAFSPYPFAVRLGGYS 383
            N+F+   LC+F+ L FGD +      F P    + L G+S
Sbjct: 1159 NYFIPAMLCVFIFLAFGDESYTTAMNFPPTFCLLLLYGWS 1198


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 QLTYPSGHSWNSLLAEQQMGKEKMRSSLQG*HRQXT 462
           QL  P GHS++  L    MG  K R  +   HR+ T
Sbjct: 79  QLFVPLGHSFSFELGITDMGNNKRRIFMSSSHREVT 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,193,728
Number of Sequences: 59808
Number of extensions: 343916
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)