Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0673
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E4.11 protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 504 NINRIRSKFCKLREPCALFVSHSFYQPTRRL 596
           N+  I S  C++ +P  +F+S SF QP  R+
Sbjct: 135 NLENIFSSICRVLKPNGIFISVSFTQPHFRI 165


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  YNLPDSEWLPSPMDFSNTRGRANSLP 4
           YN   S+  P PMD+SN R  +N  P
Sbjct: 814 YNPSHSQCPPPPMDYSNNRRNSNLTP 839


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  YNLPDSEWLPSPMDFSNTRGRANSLP 4
           YN   S+  P PMD+SN R  +N  P
Sbjct: 814 YNPSHSQCPPPPMDYSNNRRNSNLTP 839


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,569
Number of Sequences: 27780
Number of extensions: 260143
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)