Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0672
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.15 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   3.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 291 YYVIPYSCDLCNEY--CNRFVFFLSMFCYECINFLIDFIF*WSSFCSVIVYLPLL*FCCK 464
           Y+V+P    LC  Y  C   +F + +    CI         +  FC+ I++   L FCC 
Sbjct: 135 YFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCI---------YHFFCAFIIFTMHLLFCCA 185

Query: 465 F 467
           F
Sbjct: 186 F 186


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 303 PYSCDLCNEYCNR 341
           PYSCD+C +   R
Sbjct: 107 PYSCDICGKAFRR 119


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 303 PYSCDLCNEYC-NRFVFFL 356
           P++C++C   C ++  FFL
Sbjct: 498 PFTCNMCGVECSDKVSFFL 516


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 686 YLVTVFCWIKKYAHPQ 639
           YL+   CW K  + PQ
Sbjct: 8   YLIVACCWGKSLSIPQ 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,404
Number of Sequences: 336
Number of extensions: 3470
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)