Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0672
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   5.9  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   7.9  

>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 542 CDHFLYYVMNSKLFRARMKV 601
           CDH L Y+ NS+  +A +K+
Sbjct: 23  CDHLLQYISNSRDSKAGLKI 42


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 667 VG*KNMPIPKVVCKCSFKNYCRNFHTCP 584
           VG     +PK+   C+F  + +N H+ P
Sbjct: 5   VGTNGRKVPKIASLCNFLKFNKNIHSNP 32


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 367 QNIDKKKTNLLQYSLHKS 314
           +N+D K  N+  +SLH+S
Sbjct: 128 ENVDSKDNNITNFSLHRS 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,788
Number of Sequences: 5004
Number of extensions: 52742
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)